Co-expression analysis

Gene ID	1609930_at
Gene name	hypothetical LOC100243959
Homology with Arabidopsis	Similar to At5g11260: HY5 (ELONGATED HYPOCOTYL 5) (HF=3e-24)
Module size	6 genes
NF	0.08
%ile	15.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.92	1609930_at	CB340826	hypothetical LOC100243959	-	3e-24	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1622268_at	CF372312	-	-	9e-16	At4g11110	SPA2 (SPA1-RELATED 2)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.96	1621150_at	CF516004	hypothetical protein LOC100248338	-	1e-8	At5g39040	ATTAP2	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1607289_at	CD802115	hypothetical protein LOC100243734	-	9e-2	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.03	4.2	0.97	1619250_at	CF511091	-	-	1e+0	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.97	1609776_at	CB979308	hypothetical protein LOC100252635	-	1e-19	At1g73875	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	99.3	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
7.4	99.2	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
7.1	99.1	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.6	97.6	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, Contig15369_at, orthologous to the query gene, 1609930_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig15369_at	At5g11260	-	-	1e-4	At3g17609	HYH (HY5-HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig8654_at	At5g11260	-	-	3e-90	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	O.I.	H.G.	S.X.	Please select
0.47	62.2	Contig1673_s_at	At5g11260	-	-	3e-2	At4g18800	ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D)	O.I.	H.G.	S.X.	Please select
0.33	42.6	HD04E24u_at	At5g11260	-	-	1e+0	At5g13790	AGL15 (AGAMOUS-LIKE 15)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig8626_at	At5g11260	-	-	3e+0	At3g05935	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig15965_at	At5g11260	-	-	1e+0	At3g11780	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig17478_at	At5g11260	-	-	2e+0	At2g17695	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	HS03H22u_at	At5g11260	-	-	3e-1	At4g32900	aminoacyl-tRNA hydrolase	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig11134_at	At5g11260	-	-	5e-1	At5g49210	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig15529_at	At5g11260	-	-	7e-19	At5g39900	GTP binding / GTPase/ translation elongation factor	O.I.	H.G.	S.X.	Please select
0.22	24.2	HVSMEa0015B19r2_x_at	At5g11260	-	-	4e+0	At5g04070	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig12368_at	At5g11260	-	-	1e-1	At4g34330	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig832_s_at	At5g11260	-	-	9e-6	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig1180_at	At5g11260	-	-	4e-20	At1g07790	HTB1	O.I.	H.G.	S.X.	Please select
0.16	15.3	EBem10_SQ003_I08_s_at	At5g11260	-	-	2e+0	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.15	14.1	HU09I17u_at	At5g11260	-	-	7e-1	At1g64107	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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