Co-expression analysis

Gene ID	1609904_at
Gene name	hypothetical protein LOC100267206
Homology with Arabidopsis	Similar to At5g61410: RPE (HF=4e-78)
Module size	9 genes
NF	0.74
%ile	96.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.96	1609904_at	CF204988.1	hypothetical protein LOC100267206	-	4e-78	At5g61410	RPE	O.I.	H.G.	S.X.	Please select
0.94	99.3	0.96	1614054_at	CF206745.1	-	-	4e-47	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.96	1618907_x_at	CF202612.1	-	-	4e+0	At5g17470	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.88	95.4	0.97	1616230_x_at	CF202354.1	-	-	2e+1	At5g43510	-	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.96	1615753_at	CF207576	-	-	2e-11	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.95	1608322_x_at	CF205688.1	-	-	7e-1	At5g10890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.96	1609907_x_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.97	1609380_x_at	CF203033.1	-	-	8e-10	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1620380_x_at	CF203025.1	-	-	1e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.4	91.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
2.3	90.7	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436368	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
2.1	89.1	GSM147678	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	7

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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