Co-expression analysis

Gene ID	1609887_at
Gene name
Homology with Arabidopsis	Similar to At5g53160: unknown protein (HF=1e-19)
Module size	6 genes
NF	0.48
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.94	1609887_at	CF205557.1	-	-	1e-19	At5g53160	unknown protein	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1610891_x_at	CF201787.1	-	-	8e-1	At4g34760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1618899_at	CF206580.1	-	-	7e-18	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1618894_at	CF201787.1	-	-	8e-1	At4g34760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1606916_at	CF202248.1	-	-	1e-1	At3g10640	VPS60.1	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.95	1621847_at	CF202726.1	hypothetical protein LOC100267426	-	4e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.4	98.3	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.8	93.4	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.4	91.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40
2.4	91.3	GSM147683	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	12
2.4	91.3	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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