Co-expression analysis

Gene ID 1609790_at
Gene name hypothetical protein LOC100252173
Homology with ArabidopsisSimilar to At3g23730: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (HF=1e-10)
Module size 6 genes
NF 0.63
%ile 89.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.861609790_atCF207994hypothetical protein LOC100252173-1e-10At3g23730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeO.I.H.G.S.X.
0.9198.80.861614387_s_atAF271662.1hypothetical protein LOC100250080-1e-8At2g36830GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)O.I.H.G.S.X.
0.8093.60.891622607_atAF271662.1hypothetical protein LOC100250080-1e-8At2g36830GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)O.I.H.G.S.X.
0.6183.20.861612509_atBQ792148polygalacturonase-5e-6At5g14650polygalacturonase, putative / pectinase, putativeO.I.H.G.S.X.
0.5375.20.891621879_atCF215292hypothetical protein LOC100244617-5e+0At5g45350proline-rich family proteinO.I.H.G.S.X.
0.2022.40.851620201_atCB972625hypothetical LOC100250914-5e-15At5g19730pectinesterase family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.796.2GSM436372Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.796.2GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.395.2GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.294.9GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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