Co-expression analysis

Gene ID	1609774_s_at
Gene name	hypothetical protein LOC100258211
Homology with Arabidopsis	Similar to At5g45130: RHA1 (RAB HOMOLOG 1) (HF=2e-34)
Module size	8 genes
NF	0.17
%ile	25.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1609774_s_at	CA817625	hypothetical protein LOC100258211	-	2e-34	At5g45130	RHA1 (RAB HOMOLOG 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1619904_at	CB974700	-	-	8e-42	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1608449_at	CB349956	hypothetical protein LOC100247109	-	6e-72	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1622486_at	CF510820	hypothetical protein LOC100247768	-	3e-13	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1614946_at	CF510992	hypothetical protein LOC100258219	-	8e-64	At4g24820	26S proteasome regulatory subunit, putative (RPN7)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1621416_at	CF514904	hypothetical protein LOC100263998	-	5e-94	At1g49300	RABG3E (RAB GTPASE HOMOLOG G3E)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1609017_s_at	CA809548	hypothetical protein LOC100262493	-	1e-6	At3g14430	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.97	1619057_at	CD799697	hypothetical protein LOC100252925	-	1e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.6	92.5	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.6	92.5	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.6	92.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.6	92.5	GSM436418	V. riparia (VR, PI588259) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.2	89.9	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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