Co-expression analysis

Gene ID	1609751_at
Gene name	hypothetical protein LOC100253636
Homology with Arabidopsis	Similar to At5g18520: - (HF=5e-51)
Module size	7 genes
NF	0.60
%ile	86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.98	1609751_at	CA817020	hypothetical protein LOC100253636	-	5e-51	At5g18520	-	O.I.	H.G.	S.X.	Please select
0.75	91.3	0.98	1621699_at	CF212982	hypothetical protein LOC100248753	-	2e-35	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.98	1609816_at	CF514960	hypothetical protein LOC100264261	-	2e-6	At5g08560	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.99	1618198_at	CB007829	hypothetical protein LOC100242410	-	3e-1	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1616458_s_at	CF515510	hypothetical protein LOC100256310	-	1e-1	At3g43910	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.99	1607134_at	BQ794051	hypothetical protein LOC100243531	-	2e+0	At3g51100	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1611513_s_at	CF414212	hypothetical protein LOC100262157	-	2e-1	At3g49950	scarecrow transcription factor family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436410	V. riparia (VR, PI588259) SD, 13h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage