Co-expression analysis

Gene ID 1609744_at
Gene name hypothetical protein LOC100240811 /// hypothetical protein LOC100263073
Homology with ArabidopsisSimilar to At3g42630: pentatricopeptide (PPR) repeat-containing protein (HF=2e+0)
Module size 6 genes
NF 0.62
%ile 89.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.931609744_atCF203760.1hypothetical protein LOC100240811 /// hypothetical protein LOC100263073-2e+0At3g42630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.6183.20.911610600_atCA813949hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829-3e-1At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.5679.40.921622670_s_atCF207059.1hypothetical protein LOC100242012-1e+1At5g05590PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)O.I.H.G.S.X.
0.5577.30.931618355_atCB837772--1e+0At2g16750protein kinase family proteinO.I.H.G.S.X.
0.4464.10.921609397_atCF512090hypothetical protein LOC100248717-1e-35At5g64300ATGCHO.I.H.G.S.X.
0.4464.10.941615458_atCB969727hypothetical protein LOC100255664-2e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.993.8GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM147687Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation16Link to GEO
2.591.9GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.491.3GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g42630, orthologous to the query gene, 1609744_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.7284.8At3g42630823280pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POO.I.H.G.S.X.
0.5773.8At2g26350817175PEX10Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes and is involved in importing proteins into the peroxisome. Required for embryogenesis.O.I.H.G.S.X.
0.5773.8At2g44900819099armadillo/beta-catenin repeat family protein / F-box family proteinARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings.O.I.H.G.S.X.
0.5267.4At5g61580836279PFK4 (PHOSPHOFRUCTOKINASE 4)F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAVO.I.H.G.S.X.
0.5065.3At3g53090824475UPL7encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.O.I.H.G.S.X.
0.4862.5At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.4761.2At1g28320839726DEG15Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.O.I.H.G.S.X.
0.4659.8At1g27850839678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVAO.I.H.G.S.X.
0.4659.8At2g23460816878XLG1 (EXTRA-LARGE G-PROTEIN 1)encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.O.I.H.G.S.X.
0.4558.3At1g79810844320TED3 (REVERSAL OF THE DET PHENOTYPE 3)Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes.O.I.H.G.S.X.
0.4558.3At3g04970819657zinc finger (DHHC type) family proteinF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.4558.3At3g27320822351hydrolaseF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.H.G.S.X.
0.4457.2At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAO.I.H.G.S.X.
0.4457.2At2g22090816744UBP1 interacting protein 1a (UBA1a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.O.I.H.G.S.X.
0.4355.3At5g41480834149GLA1 (GLOBULAR ARREST1)Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.O.I.H.G.S.X.
0.4355.3At1g04950839370TAF6 (TBP-ASSOCIATED FACTOR 6)Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.O.I.H.G.S.X.
0.4355.3At1g11060837647unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOFO.I.H.G.S.X.
0.4152.4At2g19560816475EER5 (ENHANCED ETHYLENE RESPONSE 5)encodes a protein with a PAM domain involved in ethylene signaling. eer5 mutants show ethylene hypersensitivity in relation to hypocotyl elongation. EER5 interacts with EIN2 and with COP9 in Y2H assays. EIN3 protein levels are the same in WT and eer5-1 mutants. EER5 may be involved in promoting a dampening of the ethylene response.O.I.H.G.S.X.
0.4152.4At4g32560829391paramyosin-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFAPVO.I.H.G.S.X.
0.4152.4At5g09740830834HAM2 (histone acetyltransferase of the MYST family 2)Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.O.I.H.G.S.X.
0.4152.4At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.O.I.H.G.S.X.
0.3948.4At2g41020818702WW domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.3846.7At5g63200836441tetratricopeptide repeat (TPR)-containing proteinF:binding;P:biological_process unknown;C:cellular_component unknown;OBMAFPO.I.H.G.S.X.
0.3846.7At1g22020838807SHM6 (serine hydroxymethyltransferase 6)Encodes a putative serine hydroxymethyltransferase.O.I.H.G.S.X.
0.3846.7At1g24190839032SNL3 (SIN3-LIKE 3)Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19.O.I.H.G.S.X.
0.3643.6At1g35470840440SPla/RYanodine receptor (SPRY) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3541.6At3g29270822584ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.3541.6At3g55480824714adaptin family proteinF:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOPO.I.H.G.S.X.
0.3439.8At4g31150829243endonuclease V family proteinF:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPFO.I.H.G.S.X.
0.3439.8At3g15380820777choline transporter-relatedF:unknown;P:biological_process unknown;C:plasma membrane;MOFPO.I.H.G.S.X.
0.3338.1At5g02850831762hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.3235.7At4g00450827954CRP (CRYPTIC PRECOCIOUS)A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.O.I.H.G.S.X.
0.3235.7At5g11380831009DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity.O.I.H.G.S.X.
0.3235.7At4g10180826609DET1 (DE-ETIOLATED 1)Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.O.I.H.G.S.X.
0.3133.8At3g06340819808DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.3032.1At4g15475827219F-box family protein (FBL4)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVO.I.H.G.S.X.
0.3032.1At2g05170815065ATVPS11Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.3032.1At3g56840824851FAD-dependent oxidoreductase family proteinF:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPVO.I.H.G.S.X.
0.2930.3At2g40410818634Ca(2+)-dependent nuclease, putativeF:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.2930.3At1g16710838242HAC12 (histone acetyltransferase of the CBP family 12)Encodes an enzyme with histone acetyltransferase activity that can use both H3 and H4 histones as substrates. No single prior lysine acetylation is sufficient to block HAC12 acetylation of the H3 or H4 peptides, suggesting that HAC12 can acetylate any of several lysines present in the peptides.O.I.H.G.S.X.
0.2726.2At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.2624.4At4g15415827211ATB' GAMMAB' regulatory subunit of PP2A (AtB'gamma)O.I.H.G.S.X.
0.2624.4At5g63870836507PP7 (SERINE/THREONINE PHOSPHATASE 7)Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.O.I.H.G.S.X.
0.2420.7At1g21630838765calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVAO.I.H.G.S.X.
0.2217.5At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.

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