Co-expression analysis

Gene ID 1609744_at
Gene name hypothetical protein LOC100240811 /// hypothetical protein LOC100263073
Homology with ArabidopsisSimilar to At3g42630: pentatricopeptide (PPR) repeat-containing protein (HF=2e+0)
Module size 6 genes
NF 0.62
%ile 89.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.931609744_atCF203760.1hypothetical protein LOC100240811 /// hypothetical protein LOC100263073-2e+0At3g42630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.6183.20.911610600_atCA813949hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829-3e-1At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.5679.40.921622670_s_atCF207059.1hypothetical protein LOC100242012-1e+1At5g05590PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)O.I.H.G.S.X.
0.5577.30.931618355_atCB837772--1e+0At2g16750protein kinase family proteinO.I.H.G.S.X.
0.4464.10.921609397_atCF512090hypothetical protein LOC100248717-1e-35At5g64300ATGCHO.I.H.G.S.X.
0.4464.10.941615458_atCB969727hypothetical protein LOC100255664-2e+0At5g16490RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.993.8GSM436347Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM147687Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation16Link to GEO
2.591.9GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM147693Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation22Link to GEO
2.491.3GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436368Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.491.3GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436354Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436358Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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