CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609735_at

Gene name hypothetical protein LOC100249713
Homology with Arabidopsis Similar to At1g50030: TOR (TARGET OF RAPAMYCIN) (HF=1e-75)

Module size 6 genes

NF 0.52

%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 80.6 0.98 1609735_at CF372575 hypothetical protein LOC100249713 - 1e-75 At1g50030 TOR (TARGET OF RAPAMYCIN) O.I. H.G. S.X.
0.73 90.8 0.98 1614010_at CF518977 hypothetical LOC100246762 - 4e+0 At1g60390 BURP domain-containing protein / polygalacturonase, putative O.I. H.G. S.X.
0.60 81.9 0.98 1611177_at CF518669 hypothetical protein LOC100263874 - 2e-8 At1g60200 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.60 81.9 0.98 1607582_at CB349344 hypothetical protein LOC100260114 - 1e+0 At2g23660 LBD10 (LOB DOMAIN-CONTAINING PROTEIN 10) O.I. H.G. S.X.
0.50 72.7 0.98 1612962_at BQ794726 - - 2e-2 At5g35530 40S ribosomal protein S3 (RPS3C) O.I. H.G. S.X.
0.23 27.5 0.98 1611458_at CF207715 hypothetical protein LOC100243644 - 2e-18 At2g35530 bZIP transcription factor family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.1 98.7 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.6 97.6 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
4.4 97.3 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.1 96.9 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.8 96.4 GSM287902 Red soft berry C30 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147743 Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation 72
2.6 92.5 GSM287896 Pink soft berry C27 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.6 92.5 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
2.6 92.5 GSM147742 Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation 71

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g50030, orthologous to the query gene, 1609735_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g50030 841427 TOR (TARGET OF RAPAMYCIN) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. O.I. H.G. S.X.
0.41 52.4 At5g07940 830688 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPA O.I. H.G. S.X.
0.38 46.7 At5g24350 832505 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. H.G. S.X.
0.26 24.4 At1g23230 838932 unknown protein F:molecular_function unknown;P:response to salt stress;C:unknown;MPO O.I. H.G. S.X.
0.26 24.4 At1g67140 843034 SWEETIE (SWEETIE) F:binding;P:trehalose metabolic process, carbohydrate metabolic process, starch metabolic process;C:cytosol;MOBFPVA O.I. H.G. S.X.
0.23 19.3 At3g45190 823655 SIT4 phosphatase-associated family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPAV O.I. H.G. S.X.
0.20 14.4 At2g46020 819210 transcription regulatory protein SNF2, putative Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D. O.I. H.G. S.X.
0.16 8.8 At5g23110 832375 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVB O.I. H.G. S.X.
0.15 7.8 At4g01290 828103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBP O.I. H.G. S.X.
0.14 6.8 At3g15120 820743 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;MOBFPAV O.I. H.G. S.X.
0.13 5.8 At5g12370 831112 SEC10 (EXOCYST COMPLEX COMPONENT SEC10) F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOB O.I. H.G. S.X.
0.13 5.8 At2g36960 818270 TKI1 (TSL-kinase interacting protein 1) Arabidopsis thaliana myb/SANT domain protein O.I. H.G. S.X.
0.12 4.9 At1g55325 841978 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBPOF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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