Co-expression analysis

Gene ID	1609684_at
Gene name	similar to pyruvate decarboxylase
Homology with Arabidopsis	Similar to At5g54960: PDC2 (pyruvate decarboxylase-2) (HF=3e-41)
Module size	6 genes
NF	0.69
%ile	94.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.95	1609684_at	CB009168	similar to pyruvate decarboxylase	-	3e-41	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.95	1618981_at	BQ797430	hypothetical protein LOC100261093	-	2e-35	At5g14780	FDH (FORMATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.95	1619798_at	CF206345.1	-	-	6e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.95	1611428_at	CD797261	hypothetical protein LOC100242068	-	1e+0	At5g48470	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.96	1615778_at	BQ792775	hypothetical protein LOC100253193	-	1e-3	At2g42670	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.95	1617698_at	BM436537	hypothetical protein LOC100259464	-	5e-23	At1g30910	molybdenum cofactor sulfurase family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	99.8	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
4.7	97.7	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
3.2	94.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
3.0	94.2	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.0	94.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.0	94.2	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
3.0	94.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.8	93.4	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
2.7	93.0	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.7	93.0	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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