Co-expression analysis

Gene ID	1609644_at
Gene name	hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489
Homology with Arabidopsis	Similar to At2g24280: serine carboxypeptidase S28 family protein (HF=2e-14)
Module size	8 genes
NF	0.43
%ile	65.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	0.93	1609644_at	BQ799340	hypothetical protein LOC100260722 /// hypothetical protein LOC100260971 /// hypothetical protein LOC100262489	-	2e-14	At2g24280	serine carboxypeptidase S28 family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1612100_at	CF215638	hypothetical protein LOC100248200	-	4e+0	At5g03840	TFL1 (TERMINAL FLOWER 1)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.94	1615191_at	BQ794962	hypothetical protein LOC100254381	-	5e-32	At4g37510	ribonuclease III family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1612750_at	CA817715	hypothetical protein LOC100248749	-	2e+0	At3g55390	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.95	1609396_at	CF210676	hypothetical protein LOC100249947	-	3e-10	At2g32180	PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1614345_s_at	CA814149	hypothetical protein LOC100248615	-	1e-19	At4g26670	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1613696_at	CA817501	hypothetical protein LOC100242891	-	1e+0	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1612576_at	CF209978	hypothetical protein LOC100242562	-	4e-2	At1g47720	OSB1 (Organellar Single-stranded)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.4	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436351	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
1.8	86.0	GSM287884	Green soft berry C7 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.7	84.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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