Co-expression analysis

Gene ID	1609629_at
Gene name	hypothetical protein LOC100250476
Homology with Arabidopsis	Similar to At5g13330: Rap2.6L (related to AP2 6L) (HF=3e-17)
Module size	6 genes
NF	0.60
%ile	87.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.94	1609629_at	CF606022	hypothetical protein LOC100250476	-	3e-17	At5g13330	Rap2.6L (related to AP2 6L)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.94	1621570_at	CB339408	hypothetical protein LOC100255693	-	4e-5	At2g34070	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.94	1620628_at	CF403671	neutral invertase	-	2e-37	At1g56560	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.92	1618771_s_at	CD715283	hypothetical protein LOC100262843	-	3e-4	At1g25560	TEM1 (TEMPRANILLO 1)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.95	1609762_s_at	CD712929	hypothetical protein LOC100257013	-	4e-19	At1g16270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.94	1620725_at	BQ795649	hypothetical protein LOC100249240	-	4e-1	At4g37445	-	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.2	94.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.3	90.7	GSM147698	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation	27
2.1	89.1	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.0	88.2	GSM436367	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
1.8	86.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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