Co-expression analysis

Gene ID	1609587_at
Gene name
Homology with Arabidopsis	Similar to At1g32220: binding / catalytic/ coenzyme binding (HF=5e-9)
Module size	21 genes
NF	0.23
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.95	1609587_at	CF202068.1	-	-	5e-9	At1g32220	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.97	1617537_at	CF214567	hypothetical protein LOC100267729	-	7e-2	At1g53460	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.96	1621364_s_at	CF511664	hypothetical protein LOC100252604	-	2e-12	At2g24940	AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1615292_at	CF214583	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	1611597_at	CB918250	hypothetical protein LOC100252439	-	1e-1	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.97	1616536_at	CF608264	hypothetical protein LOC100249974	-	1e-10	At3g08020	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1607488_at	CF373706	hypothetical protein LOC100245682	-	1e+0	At3g06985	LCR44 (Low-molecular-weight cysteine-rich 44)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1612000_at	CB342454	hypothetical protein LOC100260307	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1616447_at	BQ792485	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.97	1606933_a_at	CB007886	-	-	1e-20	At1g01360	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.98	1620454_s_at	AF467946.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.97	1621964_at	CF207985	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1609281_s_at	AF467945.1	lipid transfer protein	-	2e+0	At5g01870	lipid transfer protein, putative	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.96	1614534_at	CF603286	hypothetical protein LOC100253600	-	3e-38	At4g15080	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1622757_at	CF510915	hypothetical protein LOC100253200	-	8e-6	At1g65580	FRA3 (FRAGILE FIBER3)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1616237_s_at	BQ792111	hypothetical protein LOC100253030	-	7e-5	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1620220_at	CB345823	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.96	1621040_at	BQ799491	hypothetical protein LOC100252271	-	1e-1	At1g31750	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.96	1607335_at	CD801694	hypothetical protein LOC100245908	-	1e-20	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.97	1607928_at	CF201793.1	-	-	5e-3	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.98	1617139_s_at	CF202008.1	hypothetical protein LOC100246711	-	7e+0	At5g37580	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
1.9	87.2	GSM147697	Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation	26
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.7	84.7	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.6	83.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.5	81.7	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.4	79.9	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.4	79.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.4	79.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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