Co-expression analysis

Gene ID	1609555_at
Gene name	hypothetical protein LOC100261123
Homology with Arabidopsis	Similar to At5g08790: ATAF2 (HF=2e-30)
Module size	10 genes
NF	0.87
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.94	1609555_at	CD719835	hypothetical protein LOC100261123	-	2e-30	At5g08790	ATAF2	O.I.	H.G.	S.X.	Please select
0.95	99.6	0.95	1616735_at	CF604749	hypothetical protein LOC100257315	-	1e+0	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.94	1612288_at	CB969093	-	-	3e-1	At4g09040	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	0.95	1606845_at	CF212991	hypothetical protein LOC100257315	-	1e+0	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.84	94.8	0.93	1606462_at	CA817195	hypothetical protein LOC100248701	-	1e+0	At1g04970	lipid-binding serum glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.84	94.8	0.95	1622012_at	CF204966.1	-	-	2e-2	At1g62760	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.82	93.9	0.94	1606429_at	CF373019	hypothetical protein LOC100251832	-	2e-1	At4g12390	PME1 (PECTIN METHYLESTERASE INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.82	93.9	0.95	1621244_s_at	CD797552	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.82	93.9	0.95	1617334_s_at	CF607954	-	-	1e-9	At5g65660	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.95	1618561_at	CF204500.1	hypothetical protein LOC100246875	-	2e-5	At3g03980	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	94.6	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.1	94.6	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.3	90.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.2	89.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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