Co-expression analysis

Gene ID 1609551_at
Gene name
Homology with ArabidopsisSimilar to At5g06200: integral membrane family protein (HF=4e+0)
Module size 6 genes
NF 0.05
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.821609551_atCB340797--4e+0At5g06200integral membrane family proteinO.I.H.G.S.X.
0.5072.70.981607928_atCF201793.1--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.
0.1616.70.97AFFX-Vvi-ef1a_c3_s_atVvi.8075.1.S1_c3---O.I.H.G.S.X.
0.066.80.971622789_x_atCF206467.1--4e+1At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.023.20.961607580_s_atAF501624.1similar to histone H3 /// similar to histone H3-6e-87At4g40040histone H3.2O.I.H.G.S.X.
0.023.20.97AFFX-Vvi-actin-3_c3_s_atactin 1--O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.31095.1.S1_at, orthologous to the query gene, 1609551_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.6TaAffx.31095.1.S1_atAt5g06200--4e+0At2g07640D2,D4-dienoyl-CoA reductase-relatedO.I.H.G.S.X.
0.4666.8TaAffx.82014.1.S1_atAt5g06200--1e+0At1g45063copper ion binding / electron carrierO.I.H.G.S.X.
0.4565.2TaAffx.24121.1.S1_atAt5g06200--2e-1At1g11590pectin methylesterase, putativeO.I.H.G.S.X.
0.4464.5Ta.21581.1.S1_atAt5g06200--4e+0At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.4260.9TaAffx.79596.1.S1_atAt5g06200--4e+0At1g01210DNA-directed RNA polymerase III family proteinO.I.H.G.S.X.
0.4159.6TaAffx.55117.1.S1_atAt5g06200--3e-1At2g23250UGT84B2 (UDP-glucosyl transferase 84B2)O.I.H.G.S.X.
0.4058.4TaAffx.110652.1.S1_atAt5g06200--1e-2At2g23690unknown proteinO.I.H.G.S.X.
0.3956.1TaAffx.84919.1.S1_atAt5g06200--2e+1At5g39920-O.I.H.G.S.X.
0.3956.1Ta.26652.1.A1_atAt5g06200--1e-3At1g36050unknown proteinO.I.H.G.S.X.
0.3956.1Ta.2937.3.S1_atAt5g06200--1e+0At5g42330unknown proteinO.I.H.G.S.X.
0.3956.1TaAffx.5596.1.S1_atAt5g06200--3e+0At1g12250thylakoid lumenal protein-relatedO.I.H.G.S.X.
0.3854.7Ta.29473.2.S1_atAt5g06200--1e-3At5g58110ATPase activator/ chaperone bindingO.I.H.G.S.X.
0.3651.9Ta.26301.1.A1_atAt5g06200--2e+0At1g75460ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.3651.9TaAffx.85343.1.S1_atAt5g06200--4e+0At5g34828-O.I.H.G.S.X.
0.3549.8TaAffx.82721.1.S1_atAt5g06200--3e+1At4g20780calcium-binding protein, putativeO.I.H.G.S.X.
0.3549.8TaAffx.86790.1.S1_atAt5g06200--1e+1At5g18362unknown proteinO.I.H.G.S.X.
0.3448.1TaAffx.61664.1.S1_atAt5g06200--2e-1At1g59171ATP binding / inositol pentakisphosphate 2-kinaseO.I.H.G.S.X.
0.3244.4TaAffx.111721.1.S1_atAt5g06200--4e+0At5g08770unknown proteinO.I.H.G.S.X.
0.3244.4TaAffx.83840.1.S1_atAt5g06200--4e+0At1g28170sulfotransferase family proteinO.I.H.G.S.X.
0.3244.4Ta.3911.2.S1_s_atAt5g06200--4e+0At2g44290protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3)O.I.H.G.S.X.
0.2839.2TaAffx.119601.1.S1_atAt5g06200--9e+0At5g59950RNA and export factor-binding protein, putativeO.I.H.G.S.X.
0.2735.6TaAffx.31212.1.S1_atAt5g06200--7e+0At5g20820auxin-responsive protein-relatedO.I.H.G.S.X.
0.2735.6TaAffx.56849.1.S1_atAt5g06200--1e+0At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.2633.6Ta.18019.2.S1_atAt5g06200--1e+0At1g32700zinc-binding family proteinO.I.H.G.S.X.
0.2633.6TaAffx.79532.1.S1_atAt5g06200--3e+1At4g02360unknown proteinO.I.H.G.S.X.
0.2633.6TaAffx.85941.1.S1_atAt5g06200--2e+1At5g23760heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.2024.0Ta.3501.3.A1_atAt5g06200--3e-1At5g08330TCP family transcription factor, putativeO.I.H.G.S.X.
0.2024.0TaAffx.50210.1.S1_atAt5g06200--7e-2At1g60880AGL56O.I.H.G.S.X.
0.2024.0TaAffx.4944.1.S1_atAt5g06200--4e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage