Co-expression analysis

Gene ID 1609551_at
Gene name
Homology with ArabidopsisSimilar to At5g06200: integral membrane family protein (HF=4e+0)
Module size 6 genes
NF 0.05
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.821609551_atCB340797--4e+0At5g06200integral membrane family proteinO.I.H.G.S.X.
0.5072.70.981607928_atCF201793.1--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.
0.1616.70.97AFFX-Vvi-ef1a_c3_s_atVvi.8075.1.S1_c3---O.I.H.G.S.X.
0.066.80.971622789_x_atCF206467.1--4e+1At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.023.20.961607580_s_atAF501624.1similar to histone H3 /// similar to histone H3-6e-87At4g40040histone H3.2O.I.H.G.S.X.
0.023.20.97AFFX-Vvi-actin-3_c3_s_atactin 1--O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.218254.1.S1_x_at, orthologous to the query gene, 1609551_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5078.6PtpAffx.218254.1.S1_x_atAt5g06200hypothetical protein-3e+0At4g33310unknown proteinO.I.H.G.S.X.
0.4673.7PtpAffx.214181.1.S1_atAt5g06200hypothetical protein-4e-1At3g30720QQS (QUA-QUINE STARCH)O.I.H.G.S.X.
0.4067.0PtpAffx.200984.1.S1_atAt5g06200hypothetical protein-2e-4At5g14400CYP724A1O.I.H.G.S.X.
0.4067.0PtpAffx.220572.1.S1_atAt5g06200--5e+0At2g25280-O.I.H.G.S.X.
0.0711.6PtpAffx.202125.1.S1_atAt5g06200hypothetical protein-2e-40At3g60460DUO1 (DUO POLLEN 1)O.I.H.G.S.X.
0.069.8PtpAffx.220396.1.S1_atAt5g06200hypothetical protein-1e+1At3g20993LCR56 (Low-molecular-weight cysteine-rich 56)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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