Co-expression analysis

Gene ID 1609551_at
Gene name
Homology with ArabidopsisSimilar to At5g06200: integral membrane family protein (HF=4e+0)
Module size 6 genes
NF 0.05
%ile 11.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.821609551_atCB340797--4e+0At5g06200integral membrane family proteinO.I.H.G.S.X.
0.5072.70.981607928_atCF201793.1--5e-3At4g08230glycine-rich proteinO.I.H.G.S.X.
0.1616.70.97AFFX-Vvi-ef1a_c3_s_atVvi.8075.1.S1_c3---O.I.H.G.S.X.
0.066.80.971622789_x_atCF206467.1--4e+1At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.023.20.961607580_s_atAF501624.1similar to histone H3 /// similar to histone H3-6e-87At4g40040histone H3.2O.I.H.G.S.X.
0.023.20.97AFFX-Vvi-actin-3_c3_s_atactin 1--O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.996.6GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.094.2GSM287869Green hard berry C3 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM436420V. riparia (VR, PI588259) SD, 13h 14 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.189.1GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM436365Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436423V. riparia (VR, PI588259) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436405V. riparia (VR, PI588259) LD, 15h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM436380Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig9259_at, orthologous to the query gene, 1609551_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.0Contig9259_atAt5g06200--2e-6At3g04780-O.I.H.G.S.X.
0.7388.7HVSMEh0086M12r2_s_atAt5g06200--4e+0At3g08990yippee family proteinO.I.H.G.S.X.
0.6784.7Contig5004_atAt5g06200--9e-3At3g63190RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)O.I.H.G.S.X.
0.6784.7Contig15871_atAt5g06200--1e-7At1g51040phosphatidylinositol 4-kinase, putativeO.I.H.G.S.X.
0.6178.7HVSMEn0019L21f_atAt5g06200--4e+0At1g18280protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.6077.3Contig10939_atAt5g06200--2e+0At4g35210unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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