CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609526_at

Gene name hypothetical protein LOC100261349
Homology with Arabidopsis Similar to At5g47520: AtRABA5a (Arabidopsis Rab GTPase homolog A5a) (HF=2e+0)

Module size 6 genes

NF 0.37

%ile 55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.89 1609526_at CF210472 hypothetical protein LOC100261349 - 2e+0 At5g47520 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) O.I. H.G. S.X.
0.50 72.7 0.89 1608014_at CF512552 hypothetical protein LOC100249623 - 7e-14 At1g78955 CAMS1 (Camelliol C synthase 1) O.I. H.G. S.X.
0.35 48.5 0.90 1612525_at CF516179 hypothetical protein LOC100263804 - 2e+0 At1g77910 unknown protein O.I. H.G. S.X.
0.33 45.7 0.93 1616098_at CF514166 hypothetical protein LOC100244716 - 3e-4 At5g54840 SGP1 O.I. H.G. S.X.
0.23 27.5 0.89 1619210_at AF056622.1 Cu/Zn superoxide dismutase-like - 9e-46 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) O.I. H.G. S.X.
0.21 24.0 0.90 1611115_s_at CB344303 hypothetical protein LOC100244716 - 3e-20 At3g21700 SGP2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	57.7	0.80	1621477_s_at	CF215974	hypothetical LOC100244703	-	3e+0	At3g22260	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.
0.36	50.7	0.87	1619775_at	CA807881	hypothetical protein LOC100263804	-	5e+0	At5g62880	ARAC10	O.I.	H.G.	S.X.
0.36	50.7	0.94	1611381_at	CF518081	hypothetical protein LOC100263252	-	3e-1	At3g12940	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.90	1611709_at	CA816922	hypothetical protein LOC100249539	-	7e-1	At3g45870	integral membrane family protein / nodulin MtN21-related	O.I.	H.G.	S.X.
0.15	15.6	0.92	1615407_at	CA818445	hypothetical protein LOC100249436	-	5e-25	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.
0.14	14.4	0.91	1621439_s_at	CB343781	hypothetical protein LOC100262404	-	6e-3	At1g71520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.13	13.3	0.89	1608350_at	CF205997.1	-	-	1e+0	At5g24318	catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds	O.I.	H.G.	S.X.
0.11	11.3	0.89	1609874_at	CF514134	hypothetical protein LOC100248114	-	4e-38	At3g02380	COL2 (constans-like 2)	O.I.	H.G.	S.X.
0.11	11.3	0.92	1606951_at	CF513249	hypothetical protein LOC100257242	-	1e+0	At5g19450	CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 97.5 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.3 95.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.3 95.2 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
3.1 94.6 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.0 94.2 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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