Co-expression analysis

Gene ID	1609526_at
Gene name	hypothetical protein LOC100261349
Homology with Arabidopsis	Similar to At5g47520: AtRABA5a (Arabidopsis Rab GTPase homolog A5a) (HF=2e+0)
Module size	6 genes
NF	0.37
%ile	55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.89	1609526_at	CF210472	hypothetical protein LOC100261349	-	2e+0	At5g47520	AtRABA5a (Arabidopsis Rab GTPase homolog A5a)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.89	1608014_at	CF512552	hypothetical protein LOC100249623	-	7e-14	At1g78955	CAMS1 (Camelliol C synthase 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.90	1612525_at	CF516179	hypothetical protein LOC100263804	-	2e+0	At1g77910	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.93	1616098_at	CF514166	hypothetical protein LOC100244716	-	3e-4	At5g54840	SGP1	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.89	1619210_at	AF056622.1	Cu/Zn superoxide dismutase-like	-	9e-46	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.90	1611115_s_at	CB344303	hypothetical protein LOC100244716	-	3e-20	At3g21700	SGP2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	97.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
3.4	95.5	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
3.3	95.2	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.3	95.2	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
3.1	94.6	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
3.0	94.2	GSM436373	Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.9	93.8	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.7	93.0	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.24755.1.S1_at, orthologous to the query gene, 1609526_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	98.9	TaAffx.24755.1.S1_at	At5g47520	-	-	2e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.113301.1.S1_at	At5g47520	-	-	2e-2	At4g20290	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.42687.1.S1_at	At5g47520	-	-	5e+0	At3g23250	MYB15 (MYB DOMAIN PROTEIN 15)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.9775.1.S1_at	At5g47520	-	-	4e+0	At3g07500	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.3433.1.S1_at	At5g47520	-	-	1e-14	At4g27650	PEL1 (PELOTA)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.69879.1.S1_s_at	At5g47520	-	-	1e-1	At1g01080	33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.10112.1.S1_at	At5g47520	-	-	4e-12	At3g20650	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.8971.1.S1_at	At5g47520	-	-	2e-10	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.9280.1.S1_at	At5g47520	-	-	4e+0	At5g16530	PIN5 (PIN-FORMED 5)	O.I.	H.G.	S.X.	Please select
0.17	19.8	Ta.10642.1.S1_x_at	At5g47520	-	-	1e+0	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.72097.1.S1_at	At5g47520	-	-	8e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	Ta.6599.1.S1_at	At5g47520	-	-	2e+0	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.40518.1.A1_at	At5g47520	-	-	2e+0	At5g52680	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.8158.1.A1_at	At5g47520	-	-	4e-1	At5g04120	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.93321.1.S1_at	At5g47520	-	-	2e-15	At3g44680	HDA9 (HISTONE DEACETYLASE 9)	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.58795.1.S1_at	At5g47520	-	-	7e-2	At3g51710	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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