Co-expression analysis

Gene ID 1609526_at
Gene name hypothetical protein LOC100261349
Homology with ArabidopsisSimilar to At5g47520: AtRABA5a (Arabidopsis Rab GTPase homolog A5a) (HF=2e+0)
Module size 6 genes
NF 0.37
%ile 55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.891609526_atCF210472hypothetical protein LOC100261349-2e+0At5g47520AtRABA5a (Arabidopsis Rab GTPase homolog A5a)O.I.H.G.S.X.
0.5072.70.891608014_atCF512552hypothetical protein LOC100249623-7e-14At1g78955CAMS1 (Camelliol C synthase 1)O.I.H.G.S.X.
0.3548.50.901612525_atCF516179hypothetical protein LOC100263804-2e+0At1g77910unknown proteinO.I.H.G.S.X.
0.3345.70.931616098_atCF514166hypothetical protein LOC100244716-3e-4At5g54840SGP1O.I.H.G.S.X.
0.2327.50.891619210_atAF056622.1Cu/Zn superoxide dismutase-like-9e-46At2g28190CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)O.I.H.G.S.X.
0.2124.00.901611115_s_atCB344303hypothetical protein LOC100244716-3e-20At3g21700SGP2O.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.597.5GSM147726Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation55Link to GEO
3.495.5GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
3.395.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.395.2GSM147738Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation67Link to GEO
3.194.6GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
3.094.2GSM436373Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.993.8GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
2.793.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM436381Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.793.0GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig25893_at, orthologous to the query gene, 1609526_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5066.9Contig6706_atAt5g47520--1e-1At2g18480mannitol transporter, putativeO.I.H.G.S.X.
0.4356.4HVSMEn0025O19r2_atAt5g47520--4e+0At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.3342.6Contig20233_atAt5g47520--1e+0At2g42975unknown proteinO.I.H.G.S.X.
0.3342.6Contig6385_atAt5g47520--1e+0At2g02870kelch repeat-containing F-box family proteinO.I.H.G.S.X.
0.119.4Contig1628_atAt5g47520--4e-8At1g69180CRC (CRABS CLAW)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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