CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609526_at

Gene name hypothetical protein LOC100261349
Homology with Arabidopsis Similar to At5g47520: AtRABA5a (Arabidopsis Rab GTPase homolog A5a) (HF=2e+0)

Module size 6 genes

NF 0.37

%ile 55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.89 1609526_at CF210472 hypothetical protein LOC100261349 - 2e+0 At5g47520 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) O.I. H.G. S.X.
0.50 72.7 0.89 1608014_at CF512552 hypothetical protein LOC100249623 - 7e-14 At1g78955 CAMS1 (Camelliol C synthase 1) O.I. H.G. S.X.
0.35 48.5 0.90 1612525_at CF516179 hypothetical protein LOC100263804 - 2e+0 At1g77910 unknown protein O.I. H.G. S.X.
0.33 45.7 0.93 1616098_at CF514166 hypothetical protein LOC100244716 - 3e-4 At5g54840 SGP1 O.I. H.G. S.X.
0.23 27.5 0.89 1619210_at AF056622.1 Cu/Zn superoxide dismutase-like - 9e-46 At2g28190 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) O.I. H.G. S.X.
0.21 24.0 0.90 1611115_s_at CB344303 hypothetical protein LOC100244716 - 3e-20 At3g21700 SGP2 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.5 97.5 GSM147726 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 55
3.4 95.5 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
3.3 95.2 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50
3.3 95.2 GSM147738 Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation 67
3.1 94.6 GSM147728 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 57
3.0 94.2 GSM436373 Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.9 93.8 GSM147740 Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation 69
2.7 93.0 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM436381 Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM147729 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 58

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g47520, orthologous to the query gene, 1609526_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.59 74.7 At5g47520 834802 AtRABA5a (Arabidopsis Rab GTPase homolog A5a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. H.G. S.X.
0.71 84.2 At1g47380 841141 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. H.G. S.X.
0.67 81.6 At1g74780 843817 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BOPFMA O.I. H.G. S.X.
0.67 81.6 At3g22290 821798 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.50 65.3 At1g53320 841766 AtTLP7 (TUBBY LIKE PROTEIN 7) Member of TLP family O.I. H.G. S.X.
0.44 57.2 At5g58720 835986 PRLI-interacting factor, putative F:damaged DNA binding, ATP binding;P:mismatch repair;C:cellular_component unknown;FPMOB O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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