Co-expression analysis

Gene ID	1609509_at
Gene name
Homology with Arabidopsis	Similar to At3g48930: EMB1080 (embryo defective 1080) (HF=1e-50)
Module size	11 genes
NF	0.52
%ile	77.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	0.87	1609509_at	CF206236.1	-	-	1e-50	At3g48930	EMB1080 (embryo defective 1080)	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.89	1608894_at	CF206140.1	-	-	4e-1	At5g15550	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.92	1620723_at	CF204991.1	-	-	2e-23	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.91	1621874_x_at	CF204991.1	-	-	2e-23	At5g52240	MSBP1 (membrane steroid binding protein 1)	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.94	1612496_at	CB001447	-	-	3e-17	At2g29550	TUB7	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1610010_at	CF200766.1	-	-	6e-15	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.91	1620878_at	CF202635.1	-	-	5e-10	At3g51250	senescence/dehydration-associated protein-related	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.92	1608921_x_at	CF205715.1	-	-	3e-38	At3g60245	60S ribosomal protein L37a (RPL37aC)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1610244_x_at	CF204556.1	hypothetical protein LOC100261052	-	1e-3	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.94	1622617_x_at	CF203983.1	-	-	3e-25	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.95	1614101_at	CF569218.1	-	-	4e+0	At5g45973	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.3	90.7	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.0	88.2	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.0	88.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
1.9	87.2	GSM147715	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	44
1.9	87.2	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59
1.8	86.0	GSM147733	Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation	62
1.8	86.0	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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