Co-expression analysis

Gene ID	1609508_at
Gene name	hypothetical protein LOC100242787
Homology with Arabidopsis	Similar to At5g45960: GDSL-motif lipase/hydrolase family protein (HF=4e-3)
Module size	6 genes
NF	0.51
%ile	75.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.96	1609508_at	CB976923	hypothetical protein LOC100242787	-	4e-3	At5g45960	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1618432_at	CB345244	hypothetical protein LOC100267315	-	6e+0	At5g13825	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.95	1612382_at	CB978155	-	-	2e-1	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.95	1620398_at	CA810891	hypothetical LOC100263767	-	1e-3	At3g09690	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1617386_at	CF372270	hypothetical protein LOC100265283	-	2e-27	At3g02580	STE1 (STEROL 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.95	1621016_at	CA817314	similar to transporter-related	-	3e-10	At5g20380	PHT4	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
3.0	94.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63
2.8	93.4	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
2.5	91.9	GSM436376	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM147737	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	66
2.4	91.3	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.4	91.3	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436360	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.22390.1.S1_at, orthologous to the query gene, 1609508_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	Ta.22390.1.S1_at	At5g45960	-	-	3e+0	At2g21600	ATRER1B	O.I.	H.G.	S.X.	Please select
0.67	86.3	TaAffx.29975.1.S1_at	At5g45960	-	-	7e-2	At1g15125	S-adenosylmethionine-dependent methyltransferase/ methyltransferase	O.I.	H.G.	S.X.	Please select
0.64	83.6	Ta.3320.2.A1_at	At5g45960	-	-	2e+0	At5g63660	PDF2.5	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.16590.1.S1_at	At5g45960	-	-	2e+0	At3g17670	binding	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.1940.1.S1_x_at	At5g45960	-	-	3e-1	At2g24810	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.1808.1.A1_s_at	At5g45960	-	-	1e+0	At5g27050	AGL101	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.38572.2.S1_at	At5g45960	-	-	4e-3	At5g60690	REV (REVOLUTA)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.3628.3.S1_x_at	At5g45960	-	-	4e+0	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.26299.1.A1_at	At5g45960	-	-	2e-3	At2g47060	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.3442.1.S1_at	At5g45960	-	-	6e+0	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.11542.1.S1_x_at	At5g45960	-	-	2e-2	At2g01340	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.66041.1.S1_at	At5g45960	-	-	2e+0	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.30439.1.S1_at	At5g45960	-	-	7e+0	At2g38530	LTP2 (LIPID TRANSFER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.8577.1.A1_at	At5g45960	-	-	8e-6	At3g08570	protein binding / signal transducer	O.I.	H.G.	S.X.	Please select
0.39	56.1	Ta.7281.3.S1_a_at	At5g45960	-	-	5e-6	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.6745.1.S1_at	At5g45960	-	-	1e-7	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.18983.1.S1_at	At5g45960	-	-	9e+0	At1g18730	NDF6 (NDH DEPENDENT FLOW 6)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.7281.1.S1_a_at	At5g45960	-	-	4e-11	At3g15680	zinc finger (Ran-binding) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage