Co-expression analysis

Gene ID	1609481_at
Gene name
Homology with Arabidopsis	Similar to At3g53580: diaminopimelate epimerase family protein (HF=4e-45)
Module size	6 genes
NF	0.33
%ile	47.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.96	1609481_at	BQ799713	-	-	4e-45	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.96	1613578_s_at	BM437454	hypothetical protein LOC100258843	-	4e-29	At2g47490	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1614253_at	CB971268	hypothetical protein LOC100252844	-	5e-15	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.97	1621283_at	AF257777.1	H+-pyrophosphatase	-	1e-93	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.97	1612831_s_at	CF201533.1	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.12	12.1	0.97	1606838_at	CB972815	hypothetical protein LOC100268132	-	3e-2	At1g68280	thioesterase-related	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
3.7	96.2	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.2	94.9	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.1	94.6	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
3.1	94.6	GSM147712	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	41
3.1	94.6	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.9	93.8	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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