Co-expression analysis

Gene ID 1609452_at
Gene name hypothetical protein LOC100249768
Homology with ArabidopsisSimilar to At4g31460: ribosomal protein L28 family protein (HF=3e-1)
Module size 9 genes
NF 0.37
%ile 54.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7691.50.981609452_atBQ794280hypothetical protein LOC100249768-3e-1At4g31460ribosomal protein L28 family proteinO.I.H.G.S.X.
0.4666.50.981613489_atCF403663--5e+0At3g25572CPuORF11 (Conserved peptide upstream open reading frame 11)O.I.H.G.S.X.
0.4464.10.981617244_s_atCB341989hypothetical protein LOC100262315-1e-23At4g22150PUX3O.I.H.G.S.X.
0.4260.10.981615702_atBQ797006hypothetical protein LOC100268087-4e-5At1g17980nucleotidyltransferase family proteinO.I.H.G.S.X.
0.4260.10.981621155_atBQ794745hypothetical protein LOC100248478-8e-34At2g30260U2B'' (U2 small nuclear ribonucleoprotein B)O.I.H.G.S.X.
0.3548.50.991618348_atCF373264hypothetical protein LOC100265921-1e-47At5g45750AtRABA1c (Arabidopsis Rab GTPase homolog A1c)O.I.H.G.S.X.
0.2937.70.981610434_atCF404432hypothetical protein LOC100244562-1e+0At5g24090acidic endochitinase (CHIB1)O.I.H.G.S.X.
0.2327.50.981614110_s_atCD801616cullin 1-2e-19At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.1920.90.991611870_atCF414975hypothetical protein LOC100247177-8e-152At5g09740HAM2 (histone acetyltransferase of the MYST family 2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.998.6GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
3.595.7GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
3.395.2GSM436414V. riparia (VR, PI588259) SD, 13h 3 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.591.9GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.491.3GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
2.491.3GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436388V. riparia (VR, PI588259) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM322363genotype: Chardonnay - disease type: Bois Noir infected - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.289.9GSM436413V. riparia (VR, PI588259) SD, 13h 3 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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