Co-expression analysis

Gene ID 1609442_at
Gene name hypothetical protein LOC100243127
Homology with ArabidopsisSimilar to At3g05800: transcription factor (HF=3e-4)
Module size 6 genes
NF 0.53
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6384.30.961609442_atCF373210hypothetical protein LOC100243127-3e-4At3g05800transcription factorO.I.H.G.S.X.
0.6787.90.971620804_atCD797824hypothetical protein LOC100267227-3e-114At1g55360unknown proteinO.I.H.G.S.X.
0.6081.90.981608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.5375.20.971609302_atCB979609similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.3548.50.981622185_atCF209948--3e-2At1g78915bindingO.I.H.G.S.X.
0.3345.70.981614917_atCF372079hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.90.961617084_atCF203736.1--4e-9At4g11820MVA1O.I.H.G.S.X.
0.6384.30.951616068_atCF403455--5e-7At1g78060glycosyl hydrolase family 3 proteinO.I.H.G.S.X.
0.6081.90.971608586_atCF514688hypothetical protein LOC100241814-4e-18At4g21960PRXR1O.I.H.G.S.X.
0.5072.70.971614407_atCF403465--6e-2At1g22750unknown proteinO.I.H.G.S.X.
0.5072.70.981613373_atBM437091hypothetical protein LOC100245626-5e-7At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.4767.70.961619018_atCF414864hypothetical protein LOC100254250-6e-2At5g54850unknown proteinO.I.H.G.S.X.
0.4666.50.961620512_atCF212300hypothetical protein LOC100254204-3e-9At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.4464.10.961618251_atCF205842.1--6e-9At3g5343060S ribosomal protein L12 (RPL12B)O.I.H.G.S.X.
0.4464.10.961621880_s_atCK138206.1hypothetical protein LOC100262668-3e+0At5g14360ubiquitin family proteinO.I.H.G.S.X.
0.4464.10.981613351_atCB972999hypothetical protein LOC100252023-2e-1At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.4361.50.951612811_atCF373161hypothetical protein LOC100246436-1e+0At1g76190auxin-responsive family proteinO.I.H.G.S.X.
0.4260.10.941611579_atCF403165hypothetical protein LOC100261454-2e-2At5g19090heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.4057.70.961611732_atCF215219hypothetical protein LOC100257805-3e-2At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.4057.70.961616521_atAF196485.1beta-tubulin-9e-56At5g62700TUB3O.I.H.G.S.X.
0.4057.70.971614963_atCF210984hypothetical protein LOC100266167-8e-12At1g01950armadillo/beta-catenin repeat family protein / kinesin motor family proteinO.I.H.G.S.X.
0.4057.70.981609490_s_atCK138152.1hypothetical protein LOC100267319-6e-9At4g24760unknown proteinO.I.H.G.S.X.
0.3650.70.961611932_atCB981245--5e-1At5g23830MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.3650.70.961613945_atCF414185hypothetical protein LOC100262668-5e-1At5g40770ATPHB3 (PROHIBITIN 3)O.I.H.G.S.X.
0.3548.50.951616785_atCF211839hypothetical protein LOC100259648-1e-32At4g14560IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)O.I.H.G.S.X.
0.3548.50.951613985_atCD714957--7e-15At1g30360ERD4 (early-responsive to dehydration 4)O.I.H.G.S.X.
0.3446.80.941618573_atCF216076--3e-2At1g29220transcriptional regulator family proteinO.I.H.G.S.X.
0.3345.70.921622043_atCF211984--1e+0At1g10100unknown proteinO.I.H.G.S.X.
0.3345.70.951608161_atCF203744.1--1e+1At5g63400ADK1 (ADENYLATE KINASE 1)O.I.H.G.S.X.
0.3345.70.961610567_atCF212759--3e-5At3g48185unknown proteinO.I.H.G.S.X.
0.3345.70.961619954_atCB974333hypothetical protein LOC100257028-7e-16At5g07830AtGUS2 (Arabidopsis thaliana glucuronidase 2)O.I.H.G.S.X.
0.3345.70.971616016_atCF403186hypothetical protein LOC100265943-4e-1At2g27750nucleolar matrix protein-relatedO.I.H.G.S.X.
0.3345.70.971612328_atCF212371hypothetical protein LOC100247770-6e+0At5g07510GRP14O.I.H.G.S.X.
0.3243.10.961614119_atCF215228hypothetical protein LOC100264587-4e-12At5g23100unknown proteinO.I.H.G.S.X.
0.3141.30.931608814_atCK138208.1--7e-24At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.3141.30.961619436_atCF372293hypothetical protein LOC100268063-5e-3At5g11930glutaredoxin family proteinO.I.H.G.S.X.
0.3141.30.961607489_atCK138225.1--4e-10At4g22360SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.3141.30.961613115_atCB973470hypothetical protein LOC100266895-2e-1At3g48540cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.3141.30.971619793_atCF216045--4e+0At5g17590prothymosin alpha-relatedO.I.H.G.S.X.
0.3039.40.961614200_atCD009831hypothetical protein LOC100258356-1e-3At1g48220ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseO.I.H.G.S.X.
0.2937.70.911608022_atBQ798105hypothetical protein LOC100267016-2e-2At5g37550unknown proteinO.I.H.G.S.X.
0.2937.70.921613887_atCF511099--7e-8At5g15150ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)O.I.H.G.S.X.
0.2937.70.931614530_atCF604399hypothetical protein LOC100255706-4e+0At3g11405unknown proteinO.I.H.G.S.X.
0.2937.70.961607978_atCF205852.1--1e+0At4g36791unknown proteinO.I.H.G.S.X.
0.2937.70.971616512_atCF405777hypothetical LOC100244665-2e-8At5g12350Ran GTPase binding / chromatin binding / zinc ion bindingO.I.H.G.S.X.
0.2734.00.941610562_atCF514967hypothetical protein LOC100249618-4e-32At2g39130amino acid transporter family proteinO.I.H.G.S.X.
0.2734.00.941616154_atCB003880hypothetical LOC100252606-6e-12At1g14890enzyme inhibitor/ pectinesterase/ pectinesterase inhibitorO.I.H.G.S.X.
0.2734.00.961614575_atCF415112--1e-6At5g14750ATMYB66 (MYB DOMAIN PROTEIN 66)O.I.H.G.S.X.
0.2734.00.971612516_atCB976044hypothetical protein LOC100252647-8e-9At4g39400BRI1 (BRASSINOSTEROID INSENSITIVE 1)O.I.H.G.S.X.
0.2734.00.971608474_atCF403530hypothetical protein LOC100261256-1e-3At1g09840ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)O.I.H.G.S.X.
0.2632.00.951619011_atCF208055hypothetical protein LOC100247295-7e-8At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.2530.50.931622698_atCF205397.1--2e+0At4g24350phosphorylase family proteinO.I.H.G.S.X.
0.2530.50.931619410_atCB976359hypothetical protein LOC100241577-3e-1At5g26660ATMYB86 (MYB DOMAIN PROTEIN 86)O.I.H.G.S.X.
0.2530.50.951612847_atCF208868hypothetical protein LOC100247449-2e+0At4g39150DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.2530.50.951615812_atCB342217--5e-6At1g10865-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.298.2GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
5.098.0GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.597.5GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.096.7GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.993.8GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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