CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609442_at

Gene name hypothetical protein LOC100243127
Homology with Arabidopsis Similar to At3g05800: transcription factor (HF=3e-4)

Module size 6 genes

NF 0.53

%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 84.3 0.96 1609442_at CF373210 hypothetical protein LOC100243127 - 3e-4 At3g05800 transcription factor O.I. H.G. S.X.
0.67 87.9 0.97 1620804_at CD797824 hypothetical protein LOC100267227 - 3e-114 At1g55360 unknown protein O.I. H.G. S.X.
0.60 81.9 0.98 1608829_at CD802477 hypothetical protein LOC100258592 - 9e-24 At4g03415 catalytic/ protein serine/threonine phosphatase O.I. H.G. S.X.
0.53 75.2 0.97 1609302_at CB979609 similar to somatic embryogenesis receptor kinase - 7e-14 At1g34210 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2) O.I. H.G. S.X.
0.35 48.5 0.98 1622185_at CF209948 - - 3e-2 At1g78915 binding O.I. H.G. S.X.
0.33 45.7 0.98 1614917_at CF372079 hypothetical protein LOC100267340 - 4e+0 At5g60660 PIP2 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.2 98.2 GSM287866 Green hard berry B21 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.0 98.0 GSM287875 Green hard berry C17 from plant 2 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.5 97.5 GSM287888 Green soft berry C24 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.0 96.7 GSM287873 Green hard berry B9 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM287867 Green hard berry C1 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM436346 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM287879 Green hard berry C19 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
3.5 95.7 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.9 93.8 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.8 93.4 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the rice gene, Os03g0839800, orthologous to the query gene, 1609442_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 Os03g0839800 At3g05800 - Conserved hypothetical protein 3e-2 At5g53030 unknown protein O.I. H.G. S.X.
0.47 62.3 Os05g0586500 At3g05800 - Amino acid/polyamine transporter II family protein 9e-7 At5g41800 amino acid transporter family protein O.I. H.G. S.X.
0.46 60.9 Os03g0185700 At3g05800 - The start codon is not identified. 2e-1 At4g31580 SRZ-22 O.I. H.G. S.X.
0.45 58.8 Os07g0519300 At3g05800 - Cytochrome P450 family protein 2e-1 At5g43850 ARD4 O.I. H.G. S.X.
0.40 51.1 Os06g0695800 At3g05800 - ABC transporter related domain containing protein 1e+1 At5g60400 unknown protein O.I. H.G. S.X.
0.36 44.0 Os01g0730700 At3g05800 - WRKY transcription factor 49 1e-2 At1g30650 WRKY14 O.I. H.G. S.X.
0.35 41.7 Os04g0686000 At3g05800 - U box domain containing protein 3e-3 At5g46780 VQ motif-containing protein O.I. H.G. S.X.
0.27 27.5 Os11g0435300 At3g05800 - - 1e+0 At2g36817 O.I. H.G. S.X.
0.26 25.6 Os02g0579600 At3g05800 - Transcription factor MADS27 7e-19 At3g57230 AGL16 (AGAMOUS-LIKE 16) O.I. H.G. S.X.
0.25 24.1 Os12g0183200 At3g05800 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)(3'(2'),5- bisphosphonucleoside 3'(2')-phosphohydrolase)(DPNPase) 3e-2 At5g63990 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative O.I. H.G. S.X.
0.23 21.2 Os05g0143800 At3g05800 - GH3 auxin-responsive promoter family protein 1e+0 At2g46505 SDH4 O.I. H.G. S.X.
0.23 21.2 Os07g0101300 At3g05800 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-1 At3g18520 HDA15 O.I. H.G. S.X.
0.23 21.2 Os06g0692100 At3g05800 - Protein kinase domain containing protein 1e-1 At1g48480 RKL1 O.I. H.G. S.X.
0.21 17.9 Os01g0185900 At3g05800 - WRKY transcription factor 1 (WRKY DNA-bindingprotein 1) (Zinc- dependent activator protein 1)(Transcription factor ZAP1) 4e-1 At4g04450 WRKY42 O.I. H.G. S.X.
0.21 17.9 Os05g0489900 At3g05800 - Calcium/calmodulin-dependent protein kinase 2e-5 At4g09570 CPK4 O.I. H.G. S.X.
0.17 12.6 Os04g0534200 At3g05800 - Receptor kinase-like protein 8e-4 At5g41180 leucine-rich repeat protein kinase, putative O.I. H.G. S.X.
0.17 12.6 Os02g0265200 At3g05800 - - 2e-5 At1g29280 WRKY65 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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