Co-expression analysis

Gene ID	1609428_at
Gene name	hypothetical protein LOC100257037
Homology with Arabidopsis	Similar to At1g79620: leucine-rich repeat transmembrane protein kinase, putative (HF=1e-14)
Module size	19 genes
NF	0.45
%ile	67.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.96	1609428_at	CF215282	hypothetical protein LOC100257037	-	1e-14	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.97	1614235_at	CF512911	-	-	5e-10	At3g61150	HDG1 (HOMEODOMAIN GLABROUS 1)	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.97	1613787_at	CF512513	hypothetical protein LOC100250201	-	4e-4	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1607831_at	BQ799075	hypothetical protein LOC100249242	-	8e-7	At3g03950	protein binding	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1606978_s_at	CF207835	hypothetical protein LOC100242245	-	5e-1	At1g16680	DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1620672_at	CF207554	hypothetical protein LOC100254089	-	4e-11	At3g54350	emb1967 (embryo defective 1967)	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1617357_at	CB921493	hypothetical protein LOC100263238	-	3e-25	At5g57410	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.98	1613050_at	CB971087	hypothetical protein LOC100248215	-	5e-4	At1g20470	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.97	1620990_at	CF511811	hypothetical protein LOC100247103	-	1e-18	At1g19330	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.98	1615779_at	CF415379	hypothetical protein LOC100263332	-	2e+1	At5g16567	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.97	1614963_at	CF210984	hypothetical protein LOC100266167	-	8e-12	At1g01950	armadillo/beta-catenin repeat family protein / kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1614917_at	CF372079	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.97	1616512_at	CF405777	hypothetical LOC100244665	-	2e-8	At5g12350	Ran GTPase binding / chromatin binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1610048_at	CF403624	hypothetical protein LOC100258703	-	3e-4	At5g37310	-	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1621735_at	CF512243	hypothetical protein LOC100245551	-	1e+0	At5g06660	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1608808_at	CB348362	hypothetical protein LOC100252460	-	1e+0	Atmg01020	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1608070_at	CF214791	hypothetical protein LOC100245501	-	1e+0	At4g10880	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1612058_at	CF513284	hypothetical protein LOC100259015	-	3e-15	At2g33845	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.96	1611382_at	CF212352	hypothetical protein LOC100264955	-	2e-6	At3g53850	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM299452	B_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.6	83.3	GSM436378	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.5	81.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage