Co-expression analysis

Gene ID	1609425_at
Gene name	hypothetical protein LOC100254317
Homology with Arabidopsis	Similar to At5g17450: heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related (HF=2e-5)
Module size	22 genes
NF	0.19
%ile	27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.87	1609425_at	CA815345	hypothetical protein LOC100254317	-	2e-5	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.97	1616847_s_at	CA816751	hypothetical protein LOC100267942	-	2e-12	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.96	1613588_at	CA818655	-	-	6e-175	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.96	1616440_at	CD798130	hypothetical protein LOC100240863	-	4e-3	At5g03900	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.93	1620193_at	CA816858	hypothetical protein LOC100242947	-	1e-32	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.97	1613581_at	CB981734	hypothetical protein LOC100262899	-	1e-17	At3g17800	-	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.96	1612273_at	BQ799966	-	-	3e-47	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.96	1607048_at	CB914076	hypothetical protein LOC100249101	-	7e-28	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.97	1610039_s_at	CA817529	similar to NADH-plastoquinone oxidoreductase subunit K	-	0	Atcg00480	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.95	1610306_at	CD711319	hypothetical protein LOC100241968	-	5e-3	At3g42565	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.93	1617410_at	BQ800114	hypothetical protein LOC100263359	-	2e-3	At2g35810	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.96	1609611_at	CF608067	hypothetical protein LOC100254000	-	9e-39	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.96	1614814_s_at	CB345895	hypothetical protein LOC100267103	-	5e-13	At2g47400	CP12-1	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.90	1620682_at	CA814199	hypothetical protein LOC100255065	-	2e-6	At1g26800	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.97	1609993_at	CF415478	hypothetical protein LOC100267329	-	1e-3	At3g55040	GSTL2	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.90	1618008_at	BQ797845	hypothetical LOC100242416	-	8e-6	At2g35120	glycine cleavage system H protein, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.96	1610585_at	CF404844	hypothetical protein LOC100244105	-	1e+0	At5g63000	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.94	1621619_at	CF405444	hypothetical protein LOC100255167	-	3e-10	At4g00490	BAM2 (BETA-AMYLASE 2)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.93	1613635_at	CF515464	hypothetical protein LOC100242641	-	2e-1	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.94	1614576_s_at	BM436293	hypothetical protein LOC100245884	-	1e-32	At3g23490	CYN (CYANASE)	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1617399_at	CB342525	hypothetical protein LOC100262132	-	5e-21	At5g17790	VAR3 (VARIEGATED 3)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.88	1616872_at	CB341651	hypothetical protein LOC100253885	-	3e-12	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	98.1	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.4	91.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM287902	Red soft berry C30 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.6	83.3	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
1.6	83.3	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
1.5	81.7	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
1.5	81.7	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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