Co-expression analysis

Gene ID	1609396_at
Gene name	hypothetical protein LOC100249947
Homology with Arabidopsis	Similar to At2g32180: PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18) (HF=3e-10)
Module size	9 genes
NF	0.66
%ile	92.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.95	1609396_at	CF210676	hypothetical protein LOC100249947	-	3e-10	At2g32180	PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.95	1606604_at	CF373854	hypothetical protein LOC100241081	-	2e-6	At2g39670	radical SAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.78	92.6	0.96	1611466_at	CF372402	hypothetical protein LOC100253536	-	7e-26	At4g19100	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.95	1609122_at	CB003768	hypothetical protein LOC100267142	-	7e-27	At2g04530	CPZ	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.96	1614149_at	CF513013	hypothetical protein LOC100264613	-	2e-63	At2g01320	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.95	1616203_at	CB343761	hypothetical protein LOC100248931	-	1e+0	At1g76940	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.96	1620736_a_at	CD714912	hypothetical protein LOC100255654	-	3e-39	At1g11430	plastid developmental protein DAG, putative	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1611866_at	CF513347	hypothetical protein LOC100246501	-	6e-12	At3g53460	CP29	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.95	1607464_at	CF516938	hypothetical protein LOC100253507	-	3e-30	At5g35220	EGY1 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM147695	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	24
2.6	92.5	GSM287881	Green soft berry B10 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.6	92.5	GSM147696	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	25
2.3	90.7	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
2.2	89.9	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
2.2	89.9	GSM147732	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	61
2.1	89.1	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
2.0	88.2	GSM287886	Green soft berry C22 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147730	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	59

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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