Co-expression analysis

Gene ID	1609313_at
Gene name	similar to 2-oxo acid dehydrogenase, lipoyl-binding site
Homology with Arabidopsis	Similar to At4g22320: unknown protein (HF=6e-2)
Module size	15 genes
NF	0.35
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.97	1609313_at	CF403611	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1617194_at	BQ794485	hypothetical protein LOC100264514	-	5e-1	At5g37520	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1614871_s_at	CF404051	hypothetical protein LOC100266189	-	7e-5	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.98	1607079_at	BQ797339	hypothetical protein LOC100263131	-	2e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.98	1612817_at	CB002820	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1610845_at	CF208629	hypothetical protein LOC100245365	-	2e+0	At1g68030	PHD finger protein-related	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.98	1612995_at	CD012259	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1618681_at	BQ797518	hypothetical protein LOC100241923	-	1e-30	At1g49760	PAB8 (POLY(A) BINDING PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	1608241_at	CD798818	hypothetical protein LOC100251333	-	1e-15	At5g06000	EIF3G2	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1616840_at	CF608637	hypothetical protein LOC100255499	-	9e-15	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1608869_s_at	CF514065	glyceraldehyde-3-phosphate dehydrogenase	-	4e-41	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1607580_s_at	AF501624.1	similar to histone H3 /// similar to histone H3	-	6e-87	At4g40040	histone H3.2	O.I.	H.G.	S.X.	Please select
0.26	32.0	0.98	1614869_at	CF208077	hypothetical protein LOC100251847	-	1e-12	At1g50500	HIT1 (HEAT-INTOLERANT 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.98	1615071_at	CF512279	-	-	6e-13	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.98	1610434_at	CF404432	hypothetical protein LOC100244562	-	1e+0	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	96.6	GSM287887	Green soft berry C23 from plant 2 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.2	89.9	GSM287896	Pink soft berry C27 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64
2.1	89.1	GSM322366	genotype: Chardonnay - disease type: Healthy - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM287888	Green soft berry C24 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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