Co-expression analysis

Gene ID 1609307_at
Gene name hypothetical protein LOC100254698
Homology with ArabidopsisSimilar to At3g21240: 4CL2 (4-COUMARATE:COA LIGASE 2) (HF=3e-16)
Module size 6 genes
NF 0.13
%ile 21.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6081.90.911609307_atCD715818hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)O.I.H.G.S.X.
0.6081.90.941616191_s_atCB971061hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.5779.80.911610821_atCB971061hypothetical protein LOC100253493-6e-48At2g30490C4H (CINNAMATE-4-HYDROXYLASE)O.I.H.G.S.X.
0.099.40.921612186_atCD800937hypothetical protein LOC100241494-1e+1At5g18250unknown proteinO.I.H.G.S.X.
0.088.50.931615742_atCB9706705-enolpyruvylshikimate-3-phosphate synthase-8e-121At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.034.20.921621366_s_atCF204284.1hypothetical protein LOC100259669-4e-1At3g20450-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.499.2GSM322361genotype: Chardonnay - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.697.6GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.294.9GSM147709Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation38Link to GEO
3.094.2GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287902Red soft berry C30 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.87600.1.S1_at, orthologous to the query gene, 1609307_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6791.1PtpAffx.87600.1.S1_atAt3g21240--2e-8At1g516804CL1 (4-COUMARATE:COA LIGASE 1)O.I.H.G.S.X.
0.4673.7PtpAffx.1691.1.A1_a_atAt3g21240hypothetical protein-1e-16At2g03720MRH6 (morphogenesis of root hair 6)O.I.H.G.S.X.
0.4067.0PtpAffx.214815.1.S1_atAt3g21240hypothetical protein-7e-15At5g53890leucine-rich repeat transmembrane protein kinase, putativeO.I.H.G.S.X.
0.3762.3PtpAffx.214578.1.S1_atAt3g21240sodium transporter hkt1-like protein-4e-6At4g10310HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)O.I.H.G.S.X.
0.3661.6PtpAffx.140952.1.A1_atAt3g21240--1e+0At5g22710-O.I.H.G.S.X.
0.3357.5PtpAffx.4977.1.A1_atAt3g21240cytochrome P450-3e+0At5g22990zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.3357.5PtpAffx.115238.1.A1_atAt3g21240hypothetical protein-3e+0At5g2451060s acidic ribosomal protein P1, putativeO.I.H.G.S.X.
0.2850.5PtpAffx.146541.1.A1_atAt3g21240cytochrome P450-2e+0At5g35695unknown proteinO.I.H.G.S.X.
0.2340.5PtpAffx.200390.1.S1_atAt3g21240hypothetical protein-2e+0At4g23720unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage