CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609265_at

Gene name hypothetical protein LOC100255460
Homology with Arabidopsis Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)

Module size 6 genes

NF 0.79

%ile 97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.95 1609265_at CD800725 hypothetical protein LOC100255460 - 5e-2 At3g60530 zinc finger (GATA type) family protein O.I. H.G. S.X.
0.91 98.8 0.96 1622399_at CF206628.1 similar to DNA-binding protein - 2e-27 At4g31550 WRKY11 O.I. H.G. S.X.
0.83 94.6 0.94 1609171_at CA813062 hypothetical protein LOC100251782 - 2e-2 At1g07530 SCL14 (SCARECROW-LIKE 14) O.I. H.G. S.X.
0.67 87.9 0.95 1610064_at CB341653 similar to DNA-binding protein - 3e-19 At2g38470 WRKY33 O.I. H.G. S.X.
0.67 87.9 0.96 1611285_s_at CA809190 similar to DNA-binding protein - 3e-22 At4g31550 WRKY11 O.I. H.G. S.X.
0.55 77.3 0.96 1619985_at CD004602 hypothetical protein LOC100262198 - 3e-1 At1g07530 SCL14 (SCARECROW-LIKE 14) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.95	1609265_at	CD800725	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.
0.91	98.8	0.96	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.
0.83	94.6	0.94	1609171_at	CA813062	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.
0.67	87.9	0.95	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.
0.67	87.9	0.96	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.
0.55	77.3	0.96	1619985_at	CD004602	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.91	1607670_at	CD008337	-	-	2e+0	At5g25270	-	O.I.	H.G.	S.X.
0.63	84.3	0.87	1613407_at	CD006434	-	-	1e+0	At3g57280	unknown protein	O.I.	H.G.	S.X.
0.61	83.2	0.93	1614806_s_at	CB343751	hypothetical protein LOC100264507	-	2e-4	At2g25000	WRKY60	O.I.	H.G.	S.X.
0.60	81.9	0.91	1607619_s_at	CA814423	hypothetical protein LOC100243642	-	1e+0	At2g37430	zinc finger (C2H2 type) family protein (ZAT11)	O.I.	H.G.	S.X.
0.59	80.6	0.92	1610949_s_at	CF206451.1	hypothetical protein LOC100247492	-	2e+0	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.57	79.8	0.93	1615012_s_at	CB341464	hypothetical protein LOC100251782	-	1e+0	At5g25360	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.93	1611550_at	CD800189	hypothetical protein LOC100263619	-	2e-9	At4g11070	WRKY41	O.I.	H.G.	S.X.
0.50	72.7	0.94	1616557_s_at	CF204113.1	hypothetical protein LOC100252599	-	3e-2	At1g01490	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.50	72.7	0.94	1614461_s_at	CF204470.1	hypothetical protein LOC100252599 /// hypothetical LOC100254334	-	3e-1	At5g24770	VSP2 (VEGETATIVE STORAGE PROTEIN 2)	O.I.	H.G.	S.X.
0.46	66.5	0.95	1615596_s_at	CF415291	hypothetical protein LOC100264822	-	1e-4	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.44	64.1	0.88	1622708_at	CF216056	-	-	6e-1	At5g28781	unknown protein	O.I.	H.G.	S.X.
0.43	61.5	0.92	1621970_at	CD713131	hypothetical protein LOC100243642	-	9e-2	At3g58210	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.
0.43	61.5	0.95	1606793_at	CF606029	hypothetical protein LOC100255095	-	1e+0	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.
0.38	53.6	0.89	1610367_at	CD714780	-	-	2e-2	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.
0.38	53.6	0.89	1611127_at	CF510878	hypothetical protein LOC100253943	-	2e+0	At5g11440	CID5	O.I.	H.G.	S.X.
0.38	53.6	0.90	1609705_at	CF206712.1	-	-	1e+1	Atcg00810	-	O.I.	H.G.	S.X.
0.37	51.7	0.88	1609636_at	CD006434	hypothetical protein LOC100246612	-	1e+0	At3g57280	unknown protein	O.I.	H.G.	S.X.
0.37	51.7	0.91	1620072_s_at	CF605495	similar to Os01g0238200	-	5e+0	At5g52870	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.95	1614505_s_at	CB975513	similar to At1g61340	-	2e-3	At1g61340	F-box family protein	O.I.	H.G.	S.X.
0.34	46.8	0.92	1607868_at	BM437335	hypothetical protein LOC100252782	-	1e+0	At5g01750	unknown protein	O.I.	H.G.	S.X.
0.33	45.7	0.92	1620562_at	CB343617	hypothetical protein LOC100250890	-	3e-20	At4g33050	EDA39 (embryo sac development arrest 39)	O.I.	H.G.	S.X.
0.33	45.7	0.92	1618090_at	CB342338	-	-	2e+0	At4g32330	-	O.I.	H.G.	S.X.
0.33	45.7	0.94	1613096_at	CA816045	hypothetical protein LOC100246707	-	9e-14	At3g55980	SZF1 (SALT-INDUCIBLE ZINC FINGER 1)	O.I.	H.G.	S.X.
0.33	45.7	0.94	1613186_at	CF415291	hypothetical protein LOC100264822	-	1e-4	At2g36320	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.33	45.7	0.95	1611650_at	CA808599	hypothetical protein LOC100244122	-	3e-26	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.30	39.4	0.90	1609188_at	CD715995	hypothetical protein LOC100267424	-	2e-11	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	O.I.	H.G.	S.X.
0.30	39.4	0.90	1614436_at	CF415505	-	-	1e-4	At4g15120	VQ motif-containing protein	O.I.	H.G.	S.X.
0.29	37.7	0.92	1615250_at	CF515266	-	-	4e-4	At4g16563	aspartyl protease family protein	O.I.	H.G.	S.X.
0.29	37.7	0.94	1617358_s_at	CB974510	hypothetical protein LOC100246286 /// hypothetical LOC100254879 /// hypothetical protein LOC100258299 /// hypothetical protein LOC100258874 /// hypothetical protein LOC100264041 /// hypothetical protein LOC100265184	-	2e+0	At2g45650	AGL6 (AGAMOUS-LIKE 6)	O.I.	H.G.	S.X.
0.29	37.7	0.94	1611569_at	CA814411	hypothetical protein LOC100267541	-	1e-1	At4g17230	SCL13 (Scarecrow-like 13)	O.I.	H.G.	S.X.
0.28	37.7	0.86	1609820_at	CA814473	-	-	1e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.
0.26	32.0	0.91	1619807_at	CK138255.1	-	-	8e-2	At1g13550	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.94	1608256_at	CF404926	hypothetical protein LOC100265659	-	3e-2	At5g23680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.92	1608511_at	CB342877	hypothetical protein LOC100259747	-	1e+0	At5g51190	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.25	30.5	0.94	1616198_at	CF405950	hypothetical protein LOC100242144	-	1e-7	At1g28370	ERF11 (ERF DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.7 93.0 GSM436409 V. riparia (VR, PI588259) SD, 13h 1 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436389 V. riparia (VR, PI588259) LD, 15h 1 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM436414 V. riparia (VR, PI588259) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM287891 Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287889 Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.2 89.9 GSM287892 Pink soft berry C11 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
2.1 89.1 GSM436387 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM287893 Pink soft berry C12 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
2.0 88.2 GSM436393 V. riparia (VR, PI588259) LD, 15h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436403 V. riparia (VR, PI588259) LD, 15h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.7	93.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	1609265_at
Gene name	hypothetical protein LOC100255460
Homology with Arabidopsis	Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)
Module size	6 genes
NF	0.79
%ile	97.7

Co-expression analysis

Gene ID 1609265_at Gene name hypothetical protein LOC100255460 Homology with ArabidopsisSimilar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2) Module size 6 genes NF 0.79 %ile 97.7

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1609265_at

Gene name hypothetical protein LOC100255460
Homology with Arabidopsis Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)

Module size 6 genes

NF 0.79

%ile 97.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays