Co-expression analysis

Gene ID	1609265_at
Gene name	hypothetical protein LOC100255460
Homology with Arabidopsis	Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)
Module size	6 genes
NF	0.79
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1609265_at	CD800725	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.94	1609171_at	CA813062	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1619985_at	CD004602	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the maize gene, Zm.4840.1.A1_s_at, orthologous to the query gene, 1609265_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	Zm.4840.1.A1_s_at	At3g60530	peroxisomal-coenzyme A synthetase	-	3e-1	At3g48990	AMP-dependent synthetase and ligase family protein	O.I.	H.G.	S.X.	Please select
0.74	90.3	Zm.6.2.S1_at	At3g60530	-	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.6.2.A1_at	At3g60530	-	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.18404.1.S1_at	At3g60530	hypothetical protein LOC100278048	-	2e+0	At5g30341	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.16517.1.A1_at	At3g60530	-	-	1e+0	At2g05430	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.6.1.A1_at	At3g60530	ferredoxin-dependent glutamate synthase1	-	5e-85	At5g04140	GLU1 (GLUTAMATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.16327.1.S1_at	At3g60530	Hypothetical protein LOC100216593	-	9e-7	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.2591.1.A1_a_at	At3g60530	autophagy-related 8b /// autophagy-related 8c /// hypothetical protein AY109516	-	4e-51	At1g62040	ATG8C (autophagy 8c)	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.14435.1.S1_at	At3g60530	60S ribosomal protein L22-2	-	3e-35	At3g05560	60S ribosomal protein L22-2 (RPL22B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.2911.1.A1_at	At3g60530	Hypothetical protein LOC100193903	-	9e-1	At1g73770	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage