Co-expression analysis

Gene ID	1609265_at
Gene name	hypothetical protein LOC100255460
Homology with Arabidopsis	Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)
Module size	6 genes
NF	0.79
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1609265_at	CD800725	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.94	1609171_at	CA813062	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1619985_at	CD004602	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.4992.1.S1_at, orthologous to the query gene, 1609265_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	96.3	Ptp.4992.1.S1_at	At3g60530	hypothetical protein	-	5e-2	At3g51080	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	PtpAffx.1269.1.A1_a_at	At3g60530	-	-	4e-57	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	PtpAffx.208738.1.S1_s_at	At3g60530	magnesium transporter	-	8e-47	At5g64560	magnesium transporter CorA-like family protein (MRS2-2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	PtpAffx.41142.1.S1_at	At3g60530	hypothetical protein	-	5e-1	At5g05360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	PtpAffx.43105.1.A1_a_at	At3g60530	hypothetical protein	-	3e-2	At5g66730	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.40192.1.A1_a_at	At3g60530	hypothetical protein	-	2e+0	At3g17020	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.56897.1.A1_at	At3g60530	hypothetical protein	-	1e+0	At5g14370	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.153769.1.A1_at	At3g60530	hypothetical protein	-	2e+0	At4g30500	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.212912.1.S1_at	At3g60530	hypothetical protein	-	1e+0	At3g26890	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	PtpAffx.146636.1.A1_at	At3g60530	calcium dependent protein kinase 16	-	9e-15	At5g66210	CPK28	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	PtpAffx.13638.1.S1_a_at	At3g60530	hypothetical protein	-	5e-4	At4g14410	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.2752.1.S1_at	At3g60530	hypothetical protein	-	1e-2	At2g38750	ANNAT4 (ANNEXIN ARABIDOPSIS 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.212360.1.S1_at	At3g60530	hypothetical protein	-	5e-102	At1g22620	ATSAC1 (suppressor of actin 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.46918.1.S1_at	At3g60530	hypothetical protein	-	8e-2	At1g17490	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.95850.1.A1_s_at	At3g60530	hypothetical protein	-	4e-1	At5g25560	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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