Co-expression analysis

Gene ID	1609265_at
Gene name	hypothetical protein LOC100255460
Homology with Arabidopsis	Similar to At3g60530: zinc finger (GATA type) family protein (HF=5e-2)
Module size	6 genes
NF	0.79
%ile	97.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.95	1609265_at	CD800725	hypothetical protein LOC100255460	-	5e-2	At3g60530	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.96	1622399_at	CF206628.1	similar to DNA-binding protein	-	2e-27	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.94	1609171_at	CA813062	hypothetical protein LOC100251782	-	2e-2	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.95	1610064_at	CB341653	similar to DNA-binding protein	-	3e-19	At2g38470	WRKY33	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.96	1611285_s_at	CA809190	similar to DNA-binding protein	-	3e-22	At4g31550	WRKY11	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.96	1619985_at	CD004602	hypothetical protein LOC100262198	-	3e-1	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436409	V. riparia (VR, PI588259) SD, 13h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM287891	Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287889	Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.1	89.1	GSM436387	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436393	V. riparia (VR, PI588259) LD, 15h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436403	V. riparia (VR, PI588259) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HS04O06u_at, orthologous to the query gene, 1609265_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	98.4	HS04O06u_at	At3g60530	-	-	1e-8	At5g66320	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig1206_s_at	At3g60530	-	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig10471_at	At3g60530	-	-	2e+0	At4g29030	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig12656_s_at	At3g60530	-	-	8e+0	At5g45830	DOG1 (DELAY OF GERMINATION 1)	O.I.	H.G.	S.X.	Please select
0.34	43.6	HVSMEm0004J03r2_at	At3g60530	-	-	1e+0	At4g32380	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig14340_at	At3g60530	-	-	5e+0	At4g06634	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig11378_at	At3g60530	-	-	2e+0	At4g22530	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig13652_at	At3g60530	-	-	8e-7	At1g32090	early-responsive to dehydration protein-related / ERD protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	HU05A05u_s_at	At3g60530	-	-	4e+0	At4g12030	bile acid:sodium symporter family protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig6449_s_at	At3g60530	-	-	1e+1	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig19804_at	At3g60530	-	-	2e+0	At3g54040	photoassimilate-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig14685_at	At3g60530	-	-	5e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig2046_at	At3g60530	-	-	5e+0	At1g60815	RALFL7 (RALF-LIKE 7)	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig8648_at	At3g60530	-	-	8e-16	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig11474_at	At3g60530	-	-	3e-6	At1g32850	UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig19815_at	At3g60530	-	-	7e+0	At5g42850	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig8925_at	At3g60530	-	-	3e+0	At5g66060	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig6058_at	At3g60530	-	-	8e-1	At2g22250	aminotransferase class I and II family protein	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig11433_s_at	At3g60530	-	-	4e-2	At3g06730	thioredoxin family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig11105_at	At3g60530	-	-	2e+0	At5g06270	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig7725_at	At3g60530	-	-	8e-1	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig9093_at	At3g60530	-	-	8e+0	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig13277_at	At3g60530	-	-	6e+0	At5g42680	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig11368_at	At3g60530	-	-	1e-28	At1g16740	ribosomal protein L20 family protein	O.I.	H.G.	S.X.	Please select
0.14	12.9	Contig9823_at	At3g60530	-	-	5e-1	At5g28781	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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