Co-expression analysis

Gene ID 1609250_at
Gene name SINA1p
Homology with ArabidopsisSimilar to At3g61790: seven in absentia (SINA) family protein (HF=2e-60)
Module size 6 genes
NF 0.50
%ile 75.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.991609250_atY18471.1SINA1p-2e-60At3g61790seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.6081.90.991608021_atBQ796920hypothetical protein LOC100250690-6e-1At3g46620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.5779.80.981606811_atBQ797419hypothetical protein LOC100241198-5e-123At2g30980ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)O.I.H.G.S.X.
0.4464.10.991620587_atCF373296hypothetical protein LOC100258035-2e-2At1g08970NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9)O.I.H.G.S.X.
0.3345.70.991611523_atCD801109hypothetical protein LOC100267138-6e-16At3g21865PEX22 (peroxin 22)O.I.H.G.S.X.
0.2530.50.991608865_atCF514121hypothetical protein LOC100259987-7e-90At5g38480GRF3 (GENERAL REGULATORY FACTOR 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.098.0GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO
4.096.7GSM147723Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation52Link to GEO
3.796.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
3.796.2GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
3.696.0GSM147716Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation45Link to GEO
3.395.2GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
3.094.2GSM147740Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation69Link to GEO
3.094.2GSM147734Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation63Link to GEO
2.993.8GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
2.893.4GSM147739Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation68Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage