Co-expression analysis

Gene ID	1609218_at
Gene name
Homology with Arabidopsis	Similar to At4g40030: histone H3.2 (HF=3e-1)
Module size	8 genes
NF	0.51
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.89	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	O.I.	H.G.	S.X.	Please select
0.63	84.3	0.92	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.93	1615458_at	CB969727	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.91	1622670_s_at	CF207059.1	hypothetical protein LOC100242012	-	1e+1	At5g05590	PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.92	1618260_s_at	CD799434	hypothetical protein LOC100254518	-	3e-1	At1g73830	BEE3 (BR ENHANCED EXPRESSION 3)	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.93	1618355_at	CB837772	-	-	1e+0	At2g16750	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.91	1616445_at	CD716014	hypothetical protein LOC100262839	-	1e+0	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.91	1615581_at	CB973651	-	-	1e+0	At1g29540	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436353	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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