CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609080_at

Gene name hypothetical protein LOC100265018
Homology with Arabidopsis Similar to At5g54440: unknown protein (HF=9e-21)

Module size 6 genes

NF 0.54

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 0.98 1609080_at BQ797210 hypothetical protein LOC100265018 - 9e-21 At5g54440 unknown protein O.I. H.G. S.X.
0.57 79.8 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.50 72.7 0.97 1616843_at CF606887 hypothetical protein LOC100252068 - 7e-17 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein O.I. H.G. S.X.
0.50 72.7 0.98 1620802_at CB976446 similar to putative pyruvate dehydrogenase E1 alpha subunit - 3e-89 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) O.I. H.G. S.X.
0.46 66.5 0.97 1620211_at CF513911 hypothetical protein LOC100261483 - 1e+0 At3g07565 DNA binding O.I. H.G. S.X.
0.46 66.5 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.50	72.7	0.98	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.
0.57	79.8	0.98	1616023_at	CB979152	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.
0.50	72.7	0.97	1616843_at	CF606887	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.
0.50	72.7	0.98	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.
0.46	66.5	0.97	1620211_at	CF513911	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.
0.46	66.5	0.98	1615727_at	CF205417.1	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.95	1619432_at	CD802043	-	-	7e-5	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	O.I.	H.G.	S.X.
0.67	87.9	0.97	1618934_at	CB343172	hypothetical protein LOC100264485	-	3e-20	At5g23890	-	O.I.	H.G.	S.X.
0.55	77.3	0.97	1619172_at	CD799360	hypothetical protein LOC100264449	-	1e-85	At1g50380	prolyl oligopeptidase family protein	O.I.	H.G.	S.X.
0.53	75.2	0.97	1617761_at	CB005291	-	-	6e-4	At1g59660	nucleoporin family protein	O.I.	H.G.	S.X.
0.53	75.2	0.95	1608595_at	CF413802	-	-	1e+0	At4g04580	myb family transcription factor	O.I.	H.G.	S.X.
0.50	72.7	0.93	1615677_at	CA816761	-	-	4e+0	At4g21216	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.94	1622197_at	CF403402	hypothetical protein LOC100265428	-	2e-1	At5g14600	tRNA (adenine-N1-)-methyltransferase	O.I.	H.G.	S.X.
0.50	72.7	0.96	1617315_at	CF514745	hypothetical protein LOC100261900	-	6e-26	At5g65930	ZWI (ZWICHEL)	O.I.	H.G.	S.X.
0.50	72.7	0.97	1608879_s_at	CF204246.1	hypothetical protein LOC100265837	-	2e-1	At2g20920	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.97	1611607_at	CF201459.1	-	-	4e-66	At1g13060	PBE1	O.I.	H.G.	S.X.
0.48	68.8	0.95	1617858_at	CF206233.1	-	-	5e-12	At4g17360	formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase	O.I.	H.G.	S.X.
0.46	66.5	0.94	1620803_at	CD802327	-	-	2e-5	At4g09070	-	O.I.	H.G.	S.X.
0.44	64.1	0.97	1615531_at	CB347122	hypothetical protein LOC100248795	-	8e-20	At1g77260	dehydration-responsive protein-related	O.I.	H.G.	S.X.
0.44	64.1	0.97	1621419_at	BQ796694	similar to Os09g0515500	-	4e+0	At3g53370	DNA-binding S1FA family protein	O.I.	H.G.	S.X.
0.44	64.1	0.97	1608179_at	CB005049	hypothetical protein LOC100260954	-	1e+0	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.
0.40	57.7	0.95	1608276_at	CF405421	-	-	2e+0	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.
0.40	57.7	0.95	1608228_at	CB982916	hypothetical protein LOC100262530	-	2e-1	At1g67820	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.
0.40	57.7	0.97	1615252_at	BQ792622	hypothetical protein LOC100265321	-	6e-12	At4g10030	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.38	53.6	0.93	1611518_at	CD797985	-	-	1e+1	At5g17340	unknown protein	O.I.	H.G.	S.X.
0.36	50.7	0.97	1615608_at	BQ792785	hypothetical protein LOC100248960 /// hypothetical protein LOC100255476	-	1e-22	At4g13050	acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative	O.I.	H.G.	S.X.
0.36	50.7	0.97	1614958_at	CB347627	hypothetical protein LOC100241674	-	2e-6	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	O.I.	H.G.	S.X.
0.33	45.7	0.97	1608922_at	CF215634	similar to cytidine/deoxycytidylate deaminase family protein	-	3e-43	At4g20960	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.
0.33	45.7	0.97	1611814_at	BQ794689	hypothetical protein LOC100245809	-	2e-6	At3g26380	glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein	O.I.	H.G.	S.X.
0.33	45.7	0.97	1614356_at	BQ797477	-	-	6e-1	At1g07880	ATMPK13	O.I.	H.G.	S.X.
0.32	43.1	0.97	1611430_at	CB975310	-	-	4e+0	At3g52790	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.32	43.1	0.95	1622659_at	CF405929	hypothetical protein LOC100250457	-	3e-11	At3g12050	Aha1 domain-containing protein	O.I.	H.G.	S.X.
0.32	43.1	0.97	1622086_at	CF207289	hypothetical protein LOC100265288	-	1e-1	At2g20480	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.94	1610448_at	CF212667	-	-	7e-1	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	O.I.	H.G.	S.X.
0.29	37.7	0.95	1621107_at	CF516489	-	-	1e+0	At1g22030	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	0.95	1620655_at	CB976776	hypothetical protein LOC100245782	-	6e-7	At5g65630	GTE7 (Global transcription factor group E 7)	O.I.	H.G.	S.X.
0.29	37.7	0.96	1614334_at	CD012421	-	-	3e-1	At5g60900	RLK1 (RECEPTOR-LIKE PROTEIN KINASE 1)	O.I.	H.G.	S.X.
0.28	37.7	0.94	1619173_at	CF514879	hypothetical protein LOC100267228	-	4e+0	Atmg01120	-	O.I.	H.G.	S.X.
0.28	37.7	0.96	1618606_at	CF513941	hypothetical protein LOC100258842	-	5e-37	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	O.I.	H.G.	S.X.
0.27	34.0	0.94	1614176_at	CB004193	-	-	2e+0	At1g23280	MAK16 protein-related	O.I.	H.G.	S.X.
0.27	34.0	0.96	1608294_at	BQ792612	hypothetical LOC100247896	-	1e+0	At5g06230	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.97	1622242_s_at	CF206374.1	hypothetical protein LOC100264895	-	1e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.
0.27	34.0	0.98	1615943_at	CB971749	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.
0.26	32.0	0.97	1611474_at	CD718512	hypothetical protein LOC100240955	-	1e-1	At3g27340	unknown protein	O.I.	H.G.	S.X.
0.26	32.0	0.97	1621564_at	CB971699	-	-	6e-4	At1g77230	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1616838_at	BQ797792	-	-	3e-1	At1g12180	-	O.I.	H.G.	S.X.
0.25	30.5	0.94	1616161_at	CB982478	-	-	4e+0	At5g15840	CO (CONSTANS)	O.I.	H.G.	S.X.
0.25	30.5	0.94	1608554_at	CB971773	-	-	4e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.
0.25	30.5	0.97	1607995_at	CB007776	hypothetical protein LOC100266278	-	9e-29	At2g07360	SH3 domain-containing protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1607312_at	CF511987	hypothetical protein LOC100249902	-	5e+0	At3g12370	ribosomal protein L10 family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.6 92.5 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
2.6	92.5	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	1609080_at
Gene name	hypothetical protein LOC100265018
Homology with Arabidopsis	Similar to At5g54440: unknown protein (HF=9e-21)
Module size	6 genes
NF	0.54
%ile	80.5

Co-expression analysis

Gene ID 1609080_at Gene name hypothetical protein LOC100265018 Homology with ArabidopsisSimilar to At5g54440: unknown protein (HF=9e-21) Module size 6 genes NF 0.54 %ile 80.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1609080_at

Gene name hypothetical protein LOC100265018
Homology with Arabidopsis Similar to At5g54440: unknown protein (HF=9e-21)

Module size 6 genes

NF 0.54

%ile 80.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays