Co-expression analysis

Gene ID	1609080_at
Gene name	hypothetical protein LOC100265018
Homology with Arabidopsis	Similar to At5g54440: unknown protein (HF=9e-21)
Module size	6 genes
NF	0.54
%ile	80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.98	1609080_at	BQ797210	hypothetical protein LOC100265018	-	9e-21	At5g54440	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1616023_at	CB979152	hypothetical protein LOC100252512	-	1e-38	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1616843_at	CF606887	hypothetical protein LOC100252068	-	7e-17	At4g18460	D-Tyr-tRNA(Tyr) deacylase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.98	1620802_at	CB976446	similar to putative pyruvate dehydrogenase E1 alpha subunit	-	3e-89	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1620211_at	CF513911	hypothetical protein LOC100261483	-	1e+0	At3g07565	DNA binding	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.98	1615727_at	CF205417.1	hypothetical protein LOC100261981	-	9e-2	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.5	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436382	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1	89.1	GSM436377	Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.23016.1.A1_at, orthologous to the query gene, 1609080_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	83.9	Ta.23016.1.A1_at	At5g54440	-	-	4e+0	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.111405.1.S1_at	At5g54440	-	-	1e+0	At1g62000	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.10095.2.S1_a_at	At5g54440	-	-	1e+0	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.13655.1.A1_at	At5g54440	-	-	6e+0	At3g25270	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.128418.127.A1_x_at	At5g54440	-	-	1e+0	At2g15830	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.23916.1.S1_at	At5g54440	mitogen-activated protein kinase	-	1e-52	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.14305.1.A1_at	At5g54440	-	-	2e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.66.2.S1_at	At5g54440	-	-	1e+0	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.19725.1.S1_at	At5g54440	-	-	4e-1	At4g30750	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.20332.1.A1_at	At5g54440	-	-	1e+0	At2g27229	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.113814.1.S1_at	At5g54440	-	-	1e+0	At4g10955	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	Ta.10257.1.A1_at	At5g54440	-	-	4e+0	At5g37320	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.79101.2.S1_at	At5g54440	-	-	1e+0	At3g23180	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.30673.1.S1_at	At5g54440	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.3203.2.S1_x_at	At5g54440	-	-	5e-6	At1g27530	-	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.84292.1.S1_at	At5g54440	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.31884.1.S1_at	At5g54440	-	-	2e-2	At3g51520	diacylglycerol acyltransferase family	O.I.	H.G.	S.X.	Please select
0.07	8.6	Ta.1685.1.A1_s_at	At5g54440	-	-	4e+0	At1g13330	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.15426.1.A1_at	At5g54440	-	-	4e+0	At5g10210	-	O.I.	H.G.	S.X.	Please select
0.05	6.7	TaAffx.84143.1.S1_at	At5g54440	-	-	2e+1	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.20444.1.S1_a_at	At5g54440	-	-	7e-1	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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