CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1609080_at

Gene name hypothetical protein LOC100265018
Homology with Arabidopsis Similar to At5g54440: unknown protein (HF=9e-21)

Module size 6 genes

NF 0.54

%ile 80.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 72.7 0.98 1609080_at BQ797210 hypothetical protein LOC100265018 - 9e-21 At5g54440 unknown protein O.I. H.G. S.X.
0.57 79.8 0.98 1616023_at CB979152 hypothetical protein LOC100252512 - 1e-38 At1g50140 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.50 72.7 0.97 1616843_at CF606887 hypothetical protein LOC100252068 - 7e-17 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein O.I. H.G. S.X.
0.50 72.7 0.98 1620802_at CB976446 similar to putative pyruvate dehydrogenase E1 alpha subunit - 3e-89 At1g01090 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA) O.I. H.G. S.X.
0.46 66.5 0.97 1620211_at CF513911 hypothetical protein LOC100261483 - 1e+0 At3g07565 DNA binding O.I. H.G. S.X.
0.46 66.5 0.98 1615727_at CF205417.1 hypothetical protein LOC100261981 - 9e-2 At4g31470 pathogenesis-related protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.6 92.5 GSM436429 V. riparia (VR, PI588259) SD, 13h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.5 91.9 GSM436372 Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.4 91.3 GSM436382 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436427 V. riparia (VR, PI588259) SD, 13h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM436383 Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.1 89.1 GSM436377 Seyval (SV, Seyve Villard 5-276) SD, 13h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.0 88.2 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
1.9 87.2 GSM287882 Green soft berry A21 from plant 1 cluster proximal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
1.9 87.2 GSM436354 Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g54440, orthologous to the query gene, 1609080_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.44 57.2 At5g54440 835532 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.50 65.3 At3g60860 825257 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPB O.I. H.G. S.X.
0.15 7.8 At3g13930 820606 dihydrolipoamide S-acetyltransferase, putative F:dihydrolipoyllysine-residue acetyltransferase activity, protein binding, acyltransferase activity;P:pyruvate metabolic process, metabolic process;C:mitochondrion, chloroplast, chloroplast envelope;OBMFPA O.I. H.G. S.X.
0.10 3.4 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP O.I. H.G. S.X.
0.09 2.8 At5g59210 836039 myosin heavy chain-related F:unknown;P:biological_process unknown;C:unknown;MOBFPAV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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