Co-expression analysis

Gene ID	1608968_at
Gene name	hypothetical protein LOC100251348
Homology with Arabidopsis	Similar to At2g39020: GCN5-related N-acetyltransferase (GNAT) family protein (HF=7e-22)
Module size	8 genes
NF	0.51
%ile	76.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	0.96	1608968_at	CB342367	hypothetical protein LOC100251348	-	7e-22	At2g39020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1615976_at	CF517016	hypothetical protein LOC100247651	-	2e-113	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.98	1616871_at	CF404278	hypothetical protein LOC100253007 /// similar to putative dihydrolipoamide succinyltransferase	-	3e-26	At4g26910	2-oxoacid dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	0.98	1620143_at	BQ794466	hypothetical protein LOC100248167	-	1e+0	At4g03290	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1611449_at	CD797700	hypothetical protein LOC100251803	-	6e-9	At5g47710	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	1613235_at	CF512455	hypothetical protein LOC100260767	-	1e-20	At1g17080	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1614591_at	CF216033	hypothetical protein LOC100254924	-	7e-19	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1610475_at	CB979928	hypothetical protein LOC100242577	-	1e-7	At4g20380	zinc finger protein (LSD1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.3	95.2	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
3.2	94.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.8	93.4	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM147726	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	55
2.5	91.9	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.5	91.9	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.5	91.9	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.4	91.3	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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