Co-expression analysis

Gene ID	1608945_at
Gene name	hypothetical protein LOC100263523
Homology with Arabidopsis	Similar to At4g14130: XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7) (HF=5e-32)
Module size	6 genes
NF	0.05
%ile	11.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	75.2	0.75	1608945_at	BQ793580	hypothetical protein LOC100263523	-	5e-32	At4g14130	XTR7 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 7)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.78	1621989_at	CD006576	-	-	3e-21	At4g19230	CYP707A1	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.76	1620258_at	AY427195.1	-	-	2e-2	At1g14370	APK2A (PROTEIN KINASE 2A)	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.75	1610605_at	CF372576	-	-	7e-1	At3g51200	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.76	1608231_at	CB979713	-	-	1e+0	At4g02620	vacuolar ATPase subunit F family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	0.78	1620074_at	CD713563	hypothetical protein LOC100244152	-	2e-39	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.8	99.6	GSM436357	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
3.3	95.2	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
3.0	94.2	GSM147724	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	53
2.5	91.9	GSM147742	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	71
2.3	90.7	GSM147731	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	60
2.3	90.7	GSM147736	Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation	65
2.3	90.7	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
2.2	89.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.2	89.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28766.3.S1_at, orthologous to the query gene, 1608945_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.28766.3.S1_at	At4g14130	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.16101.1.S1_at	At4g14130	-	-	8e+0	At4g12730	FLA2 (FASCICLIN-LIKE ARABINOGALACTAN 2)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.28766.2.S1_s_at	At4g14130	-	-	2e-13	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.23129.1.S1_x_at	At4g14130	-	-	2e+1	At2g10608	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.24410.1.S1_at	At4g14130	-	-	2e-2	At1g32337	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.30401.3.S1_x_at	At4g14130	-	-	3e+0	At1g06980	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage