Co-expression analysis

Gene ID 1608892_at
Gene name hypothetical protein LOC100243312
Homology with ArabidopsisSimilar to At3g45140: LOX2 (LIPOXYGENASE 2) (HF=3e-4)
Module size 20 genes
NF 0.24
%ile 34.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.20.931608892_atCF373801hypothetical protein LOC100243312-3e-4At3g45140LOX2 (LIPOXYGENASE 2)O.I.H.G.S.X.
0.7892.60.931617444_s_atCF373801hypothetical protein LOC100243312-3e-4At3g45140LOX2 (LIPOXYGENASE 2)O.I.H.G.S.X.
0.4868.80.961606521_atCF371891hypothetical protein LOC100256590-5e-1At4g37140MEE69 (MATERNAL EFFECT EMBRYO ARREST 69)O.I.H.G.S.X.
0.3548.50.951613399_atCF208828hypothetical protein LOC100254049-3e-3At5g42860unknown proteinO.I.H.G.S.X.
0.2734.00.951620930_s_atCF212327hypothetical protein LOC100249678-1e-150At3g46440UXS5O.I.H.G.S.X.
0.2530.50.961607241_atCB980618hypothetical protein LOC100264706-7e-21At2g35060KUP11O.I.H.G.S.X.
0.2428.70.941622019_s_atCF204368.1hypothetical protein LOC100243312-2e-1At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.2327.50.951622645_atCF208259hypothetical protein LOC100245405-1e-83At1g01050AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)O.I.H.G.S.X.
0.2225.60.951612176_atCF212948hypothetical protein LOC100250907-5e-23At3g17940aldose 1-epimerase family proteinO.I.H.G.S.X.
0.2225.60.941612747_atBQ800570similar to ceramide glucosyltransferase-1e+0At2g19880ceramide glucosyltransferase, putativeO.I.H.G.S.X.
0.2124.00.971610694_atCF371881similar to UDP-glucuronic acid decarboxylase 1-7e-84At3g53520UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1)O.I.H.G.S.X.
0.1920.90.961619288_s_atCA808949hypothetical protein LOC100255042-3e-33At2g38710AMMECR1 familyO.I.H.G.S.X.
0.1718.20.971616679_atBQ800439hypothetical protein LOC100251686-1e-35At2g38700MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1)O.I.H.G.S.X.
0.1718.20.951621434_atCB005041hypothetical LOC100252575-5e-2At3g48050DNA binding / protein binding / transcription regulatorO.I.H.G.S.X.
0.1414.40.971615639_a_atBQ795365hypothetical protein LOC100266227-2e-14At2g44060late embryogenesis abundant family protein / LEA family proteinO.I.H.G.S.X.
0.1414.40.971615335_s_atCF205989.1hypothetical protein LOC100241327-2e+0At4g15760MO1 (MONOOXYGENASE 1)O.I.H.G.S.X.
0.1414.40.951608095_atCF211950hypothetical protein LOC100259526-2e-32At2g259103'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing proteinO.I.H.G.S.X.
0.1313.30.961617059_atCF607205hypothetical protein LOC100265743-4e-1At5g59510RTFL5 (ROTUNDIFOLIA LIKE 5)O.I.H.G.S.X.
0.1212.10.971611263_atCF405822hypothetical protein LOC100261431-2e-29At5g43600UAH (UREIDOGLYCOLATE AMIDOHYDROLASE)O.I.H.G.S.X.
0.1111.30.971611481_s_atBQ796815hypothetical protein LOC100254523-2e+0At3g12490cysteine protease inhibitor, putative / cystatin, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.495.5GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.591.9GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.491.3GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
2.390.7GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.088.2GSM147710Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation39Link to GEO
2.088.2GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.987.2GSM287899Red soft berry C13 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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