Co-expression analysis

Gene ID	1608866_at
Gene name
Homology with Arabidopsis	Similar to At4g20350: unknown protein (HF=2e-1)
Module size	14 genes
NF	0.52
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	85.0	0.85	1608866_at	CF414105	-	-	2e-1	At4g20350	unknown protein	O.I.	H.G.	S.X.	Please select
0.74	91.0	0.89	1609218_at	BM437324	-	-	3e-1	At4g40030	histone H3.2	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.89	1610600_at	CA813949	hypothetical protein LOC100242774 /// hypothetical protein LOC100248732 /// hypothetical protein LOC100253829	-	3e-1	At3g08580	AAC1 (ADP/ATP CARRIER 1)	O.I.	H.G.	S.X.	Please select
0.70	88.6	0.93	1609744_at	CF203760.1	hypothetical protein LOC100240811 /// hypothetical protein LOC100263073	-	2e+0	At3g42630	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.65	85.0	0.86	1606750_at	AY059638.1	-	-	9e-1	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.91	1622670_s_at	CF207059.1	hypothetical protein LOC100242012	-	1e+1	At5g05590	PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)	O.I.	H.G.	S.X.	Please select
0.59	80.6	0.89	1610363_at	CB979583	hypothetical protein LOC100267452	-	9e-32	At3g62150	PGP21 (P-GLYCOPROTEIN 21)	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.86	1617596_at	CF201215.1	hypothetical protein LOC100264999	-	1e+0	At4g32590	ferredoxin-related	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.86	1615581_at	CB973651	-	-	1e+0	At1g29540	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.88	1613603_at	CF211665	hypothetical protein LOC100248706	-	1e-7	At1g47670	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	0.90	1615458_at	CB969727	hypothetical protein LOC100255664	-	2e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.90	1609397_at	CF512090	hypothetical protein LOC100248717	-	1e-35	At5g64300	ATGCH	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.88	1616445_at	CD716014	hypothetical protein LOC100262839	-	1e+0	At5g67060	HEC1 (HECATE 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.91	1618355_at	CB837772	-	-	1e+0	At2g16750	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.1	89.1	GSM322363	genotype: Chardonnay - disease type: Bois Noir infected - rep3	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM147743	Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation	72
1.8	86.0	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147719	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	48
1.7	84.7	GSM436419	V. riparia (VR, PI588259) SD, 13h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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