Co-expression analysis

Gene ID 1608829_at
Gene name hypothetical protein LOC100258592
Homology with ArabidopsisSimilar to At4g03415: catalytic/ protein serine/threonine phosphatase (HF=9e-24)
Module size 6 genes
NF 0.54
%ile 79.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.90.981608829_atCD802477hypothetical protein LOC100258592-9e-24At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.5980.60.981622185_atCF209948--3e-2At1g78915bindingO.I.H.G.S.X.
0.5375.20.971613373_atBM437091hypothetical protein LOC100245626-5e-7At3g25500AFH1 (FORMIN HOMOLOGY 1)O.I.H.G.S.X.
0.5072.70.981609302_atCB979609similar to somatic embryogenesis receptor kinase-7e-14At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.4057.70.981609490_s_atCK138152.1hypothetical protein LOC100267319-6e-9At4g24760unknown proteinO.I.H.G.S.X.
0.3345.70.981614917_atCF372079hypothetical protein LOC100267340-4e+0At5g60660PIP2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.597.5GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.397.2GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM287888Green soft berry C24 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.595.7GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.194.6GSM436346Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.194.6GSM287867Green hard berry C1 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM287879Green hard berry C19 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.893.4GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.11923.1.S1_at, orthologous to the query gene, 1608829_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8094.0Zm.11923.1.S1_atAt4g03415hypothetical protein LOC100191414-6e-1At4g03415catalytic/ protein serine/threonine phosphataseO.I.H.G.S.X.
0.9199.0Zm.6930.1.A1_atAt4g03415hypothetical protein LOC100193485-3e-27At1g29150ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)O.I.H.G.S.X.
0.8094.0Zm.8839.1.A1_atAt4g03415hypothetical protein LOC100276545-9e-2At3g27350unknown proteinO.I.H.G.S.X.
0.8094.0Zm.9751.1.A1_atAt4g03415hypothetical protein LOC100193184-4e-1At1g72220zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7792.1ZmAffx.1128.1.S1_atAt4g03415--8e-7At4g24800MA3 domain-containing proteinO.I.H.G.S.X.
0.5369.1Zm.5828.1.A1_atAt4g03415phosphoglycerate kinase-2e-29At1g56190phosphoglycerate kinase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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