Co-expression analysis

Gene ID	1608815_at
Gene name
Homology with Arabidopsis	Similar to At5g60810: unknown protein (HF=8e+0)
Module size	45 genes
NF	0.34
%ile	49.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.6	0.87	1608815_at	CB347086	-	-	8e+0	At5g60810	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.91	1613443_at	CB344672	-	-	2e+0	At3g12190	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.92	1616428_at	CB345762	-	-	4e+0	At1g21900	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.94	1614246_at	CF202512.1	-	-	3e-4	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	O.I.	H.G.	S.X.	Please select
0.56	79.4	0.90	1616373_at	CA818577	-	-	7e+0	At5g07000	ST2B (SULFOTRANSFERASE 2B)	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.93	1610930_at	CB349822	-	-	3e-32	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.94	1618264_x_at	CF200671.1	-	-	5e-14	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.93	1617623_at	CF511284	-	-	2e+0	At2g36430	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1606737_at	BQ795334	-	-	3e+0	At2g45860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.91	1608327_at	CD011236	-	-	1e+0	At1g66420	transcription regulator	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.92	1616272_at	CF371730	-	-	4e-2	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.91	1611236_at	CF204124.1	-	-	4e-7	At5g25757	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.94	1608754_at	CB980267	-	-	3e-1	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.92	1610179_at	CA818005	-	-	8e-8	At1g51650	ATP synthase epsilon chain, mitochondrial	O.I.	H.G.	S.X.	Please select
0.45	64.6	0.91	1611120_at	CF404821	-	-	3e+0	At5g42797	LCR28 (Low-molecular-weight cysteine-rich 28)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.92	1607208_at	CF206329.1	-	-	1e-21	At1g16880	uridylyltransferase-related	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.93	1618820_x_at	CF204114.1	-	-	9e-2	At1g34350	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.92	1610212_at	CF203864.1	-	-	1e+0	At5g13090	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.93	1616430_at	CA810723	-	-	2e-7	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.92	1620323_at	CF204713.1	-	-	1e+0	At2g40580	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.94	1610223_at	CF205560.1	-	-	4e-10	At1g04290	thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.91	1618067_at	CF208318	-	-	2e+0	At3g18690	MKS1 (MAP kinase substrate 1)	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1620040_at	CD715189	-	-	4e-16	Atcg00900	-	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.92	1621609_at	AY348574.1	class III peroxidase GvPx2b	-	5e-7	At5g64120	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.93	1617509_at	CB974166	-	-	2e+0	At5g07475	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.94	1618360_at	CF204032.1	-	-	5e-13	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1621897_x_at	CF200896.1	-	-	2e+0	At2g43060	transcription factor	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.94	1617776_at	CF512941	-	-	1e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.91	1620606_at	CB345868	-	-	4e+0	At2g44175	N-myristoyltransferase-related	O.I.	H.G.	S.X.	Please select
0.31	41.3	0.95	1610687_at	CF511229	-	-	1e-35	At2g37680	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.93	1607508_at	CF207972	hypothetical protein LOC100244517	-	5e-1	At1g13400	NUB (NUBBIN)	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.94	1615721_at	CA818745	-	-	4e+0	At3g23620	brix domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.93	1620933_at	CB970393	-	-	4e-3	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.94	1611130_at	CB345470	-	-	3e+0	At5g55330	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.93	1620678_at	CB837115	-	-	4e-13	At4g01690	PPOX	O.I.	H.G.	S.X.	Please select
0.24	28.7	0.94	1622124_at	CF514734	-	-	2e+0	At2g22570	NIC1 (NICOTINAMIDASE 1)	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.91	1621187_s_at	CF201896.1	-	-	8e+0	At5g50345	-	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.94	1607190_at	CB981263	-	-	1e+0	At2g35480	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.94	1621195_at	CF405454	-	-	7e-1	At3g46901	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.92	1613657_at	CF204010.1	hypothetical protein LOC100262788	-	5e-22	At5g45680	FK506-binding protein 1 (FKBP13)	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.93	1618899_at	CF206580.1	-	-	7e-18	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.92	1615225_at	CF209533	-	-	1e+0	At2g38570	-	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.92	1620556_at	CF208984	hypothetical protein LOC100261914	-	4e+0	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.92	1619306_at	CF214121	-	-	1e+0	At4g35190	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.93	1608881_at	CF372579	-	-	2e-1	At4g34690	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.9	87.2	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
1.9	87.2	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
1.8	86.0	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
1.8	86.0	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.7	84.7	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
1.7	84.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
1.6	83.3	GSM147711	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	40

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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