Co-expression analysis

Gene ID	1608782_at
Gene name
Homology with Arabidopsis	Similar to At4g21790: TOM1 (TOBAMOVIRUS MULTIPLICATION 1) (HF=2e-1)
Module size	6 genes
NF	0.10
%ile	17.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.87	1608782_at	CA811028	-	-	2e-1	At4g21790	TOM1 (TOBAMOVIRUS MULTIPLICATION 1)	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.90	1619385_at	CF206453.1	-	-	1e+1	At5g30495	-	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.94	1612447_at	CF515627	-	-	3e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.94	1617776_at	CF512941	-	-	1e+0	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.94	1617301_at	CF514880	-	-	4e+0	At5g06040	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.92	1619646_at	CB341424	hypothetical protein LOC100261680	-	4e+0	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.7	93.0	GSM436398	V. riparia (VR, PI588259) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.6	92.5	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436404	V. riparia (VR, PI588259) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
2.2	89.9	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.0	88.2	GSM147734	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	63

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage