Co-expression analysis

Gene ID 1608691_at
Gene name hypothetical protein LOC100248623
Homology with ArabidopsisSimilar to At1g78630: emb1473 (embryo defective 1473) (HF=6e-27)
Module size 6 genes
NF 0.82
%ile 98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8093.60.991608691_atCB345817hypothetical protein LOC100248623-6e-27At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.9198.80.991616390_atCF211469hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.8394.60.991621569_atCD801894hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.7792.30.991614138_atCA815957hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.6787.90.991620854_atCA818411hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.5072.70.991622193_atCF208331hypothetical protein LOC100265325-2e-35At5g30510RPS1 (RIBOSOMAL PROTEIN S1)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8394.60.971615308_atCD004852--1e+0At2g41530SFGH (S-FORMYLGLUTATHIONE HYDROLASE)O.I.H.G.S.X.
0.7390.80.981610349_s_atCF373669similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor-5e-15At1g08540SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)O.I.H.G.S.X.
0.6787.90.981613749_atCA808917hypothetical protein LOC100263280-2e-22At3g10405unknown proteinO.I.H.G.S.X.
0.6787.90.981616096_s_atCA809473hypothetical protein LOC100241260-5e-16At3g27160GHS1 (GLUCOSE HYPERSENSITIVE 1)O.I.H.G.S.X.
0.6787.90.991606458_atBQ792397hypothetical protein LOC100251697-4e-11At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.6787.90.991610155_atCF210468hypothetical protein LOC100263834-2e-25At1g16080unknown proteinO.I.H.G.S.X.
0.6384.30.991616667_a_atCB343534similar to ribosomal protein L29 family protein /// hypothetical protein LOC100259766-7e-5At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.5577.30.981619396_atBM437601hypothetical protein LOC100265576-1e-10At5g44600unknown proteinO.I.H.G.S.X.
0.5577.30.981611742_atCF518876hypothetical protein LOC100255949-8e-12At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.5072.70.981618750_atCB971031hypothetical protein LOC100241679-2e-50At2g34860EDA3 (embryo sac development arrest 3)O.I.H.G.S.X.
0.5072.70.981622803_atBQ797421hypothetical protein LOC100245108-8e-24At5g13510ribosomal protein L10 family proteinO.I.H.G.S.X.
0.5072.70.981613550_atCF519120hypothetical protein LOC100255002-1e-1At5g19240unknown proteinO.I.H.G.S.X.
0.5072.70.981611933_atCB345450hypothetical protein LOC100266645-2e-6At3g52150RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5072.70.991606900_atCA816931hypothetical protein LOC100254016-4e-16At5g1432030S ribosomal protein S13, chloroplast (CS13)O.I.H.G.S.X.
0.4767.70.951621380_atCF513977--0Atcg00680-O.I.H.G.S.X.
0.4767.70.981613405_atCF413625hypothetical protein LOC100250386-5e-28At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.4767.70.981622642_atCA814554hypothetical protein LOC100244293-2e+0At5g511104-alpha-hydroxytetrahydrobiopterin dehydrataseO.I.H.G.S.X.
0.4666.50.981616097_atCB917778hypothetical protein LOC100259438-2e-4At2g43560immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.4666.50.981617204_atCF404742hypothetical protein LOC100264070-2e-21At2g33800ribosomal protein S5 family proteinO.I.H.G.S.X.
0.4464.10.971617402_atCF373232--1e+0At5g55450protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4464.10.981619503_atCB345056hypothetical protein LOC100254346-2e-124At5g23120HCF136O.I.H.G.S.X.
0.4464.10.991607422_s_atCB339761hypothetical protein LOC100244165-4e-26At2g3345050S ribosomal protein L28, chloroplast (CL28)O.I.H.G.S.X.
0.4260.10.981612085_atCF413799hypothetical protein LOC100265702-2e+0At2g41945unknown proteinO.I.H.G.S.X.
0.4260.10.981609094_a_atCD801602hypothetical protein LOC100246766-1e+0At1g10455unknown proteinO.I.H.G.S.X.
0.4057.70.981608871_atCB340733hypothetical protein LOC100266016-1e-16At2g35500shikimate kinase-relatedO.I.H.G.S.X.
0.4057.70.981620768_atCB339399hypothetical protein LOC100259668-1e-19At1g04420aldo/keto reductase family proteinO.I.H.G.S.X.
0.4057.70.981614745_atCA818458hypothetical protein LOC100252143-2e-8At2g24090ribosomal protein L35 family proteinO.I.H.G.S.X.
0.3853.60.981622495_atBM436258hypothetical protein LOC100248841-4e-26At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.3853.60.981606617_atCF608010hypothetical protein LOC100244206-1e+0At1g16730unknown proteinO.I.H.G.S.X.
0.3853.60.981616415_atCF405075hypothetical protein LOC100254604-3e-4At5g49030OVA2 (ovule abortion 2)O.I.H.G.S.X.
0.3650.70.971615847_atCF373669similar to SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor-5e-15At1g08540SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2)O.I.H.G.S.X.
0.3345.70.971615916_atCB343101hypothetical protein LOC100264288-1e-13At4g39970haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3345.70.981607287_a_atCA817984hypothetical protein LOC100248273-3e-16At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.3243.10.981612906_atCB973863hypothetical protein LOC100257384-3e-21At5g13410immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family proteinO.I.H.G.S.X.
0.3039.40.981610649_s_atCB342925hypothetical protein LOC100263855-1e-17At1g16880uridylyltransferase-relatedO.I.H.G.S.X.
0.3039.40.971609639_atCF511590hypothetical protein LOC100264314-6e-21At1g69740HEMB1O.I.H.G.S.X.
0.3039.40.981607466_atCF413978similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome-2e-17At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.2937.70.971613843_atCF404498hypothetical protein LOC100259632-2e-4At4g15510photosystem II reaction center PsbP family proteinO.I.H.G.S.X.
0.2937.70.981612544_atBQ793854hypothetical protein LOC100260093-5e-13At5g40950RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27)O.I.H.G.S.X.
0.2937.70.971616857_atCF210148hypothetical protein LOC100254249-7e-8At1g74070peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinO.I.H.G.S.X.
0.2937.70.971611346_atCB003966hypothetical protein LOC100246730-3e-39At1g64355unknown proteinO.I.H.G.S.X.
0.2937.70.981609335_atCF209330putative oxygen evolving enhancer protein-5e-15At3g55330PPL1 (PsbP-like protein 1)O.I.H.G.S.X.
0.2837.70.971617061_s_atCD003896hypothetical protein LOC100243475-2e-15At5g55220trigger factor type chaperone family proteinO.I.H.G.S.X.
0.2837.70.971614140_atCD721694hypothetical protein LOC100250226-1e-16At1g32080membrane protein, putativeO.I.H.G.S.X.
0.2837.70.961609414_atCB972963hypothetical protein LOC100245212-2e-5At4g27700rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.2734.00.981609784_s_atCA813947hypothetical protein LOC100261841-9e-22At1g23740oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.2632.00.971614561_atCD798668hypothetical protein LOC100253040-1e-13At4g23890unknown proteinO.I.H.G.S.X.
0.2632.00.911613853_s_atCF203997.1--3e-1At5g54150unknown proteinO.I.H.G.S.X.
0.2530.50.971620684_atCA811105hypothetical protein LOC100244408-5e-10At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.
0.2530.50.981616457_atCD713450hypothetical protein LOC100263581-2e+0At5g12990CLE40 (CLAVATA3/ESR-RELATED 40)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.897.8GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.395.2GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.194.6GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.094.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
2.993.8GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.793.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.491.3GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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