Co-expression analysis

Gene ID	1608691_at
Gene name	hypothetical protein LOC100248623
Homology with Arabidopsis	Similar to At1g78630: emb1473 (embryo defective 1473) (HF=6e-27)
Module size	6 genes
NF	0.82
%ile	98.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.99	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.99	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.99	1622193_at	CF208331	hypothetical protein LOC100265325	-	2e-35	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.8	97.8	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.3	95.2	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.1	94.6	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.1	94.6	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
2.9	93.8	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the maize gene, Zm.6588.1.A1_at, orthologous to the query gene, 1608691_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	Zm.6588.1.A1_at	At1g78630	hypothetical protein LOC100192010	-	5e-23	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.3518.1.A1_at	At1g78630	-	-	1e+0	At2g22000	PROPEP6 (Elicitor peptide 6 precursor)	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.11730.1.S1_at	At1g78630	hypothetical protein LOC100272845	-	2e-26	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.2393.1.A1_at	At1g78630	hypothetical protein LOC100273606	-	1e-1	At1g36060	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.6567.1.A1_at	At1g78630	-	-	2e+0	At5g41030	TCP family transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.35	38.9	Zm.5850.1.A1_at	At1g78630	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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